Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0204

Experiment: methylglyoxal 0.001 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0202 and Ga0059261_0203 are separated by 152 nucleotidesGa0059261_0203 and Ga0059261_0204 are separated by 269 nucleotidesGa0059261_0204 and Ga0059261_0205 are separated by 142 nucleotidesGa0059261_0205 and Ga0059261_0206 are separated by 91 nucleotides Ga0059261_0202: Ga0059261_0202 - Glutathione S-transferase, at 189,537 to 190,178 _0202 Ga0059261_0203: Ga0059261_0203 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 190,331 to 190,837 _0203 Ga0059261_0204: Ga0059261_0204 - protein RecA, at 191,107 to 192,186 _0204 Ga0059261_0205: Ga0059261_0205 - DNA-3-methyladenine glycosylase I (EC 3.2.2.20), at 192,329 to 192,886 _0205 Ga0059261_0206: Ga0059261_0206 - adenosine deaminase, at 192,978 to 193,994 _0206 Position (kb) 191 192 193Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 190.422 kb on + strand, within Ga0059261_0203at 190.422 kb on + strand, within Ga0059261_0203at 190.422 kb on + strand, within Ga0059261_0203at 190.582 kb on + strand, within Ga0059261_0203at 190.582 kb on + strand, within Ga0059261_0203at 190.583 kb on - strand, within Ga0059261_0203at 190.583 kb on - strand, within Ga0059261_0203at 190.584 kb on + strand, within Ga0059261_0203at 190.584 kb on + strand, within Ga0059261_0203at 190.585 kb on - strand, within Ga0059261_0203at 190.585 kb on - strand, within Ga0059261_0203at 190.909 kb on + strandat 190.909 kb on + strandat 190.909 kb on + strandat 190.910 kb on - strandat 190.910 kb on - strandat 190.929 kb on - strandat 190.929 kb on - strandat 190.929 kb on - strandat 191.011 kb on - strandat 191.031 kb on + strandat 191.032 kb on - strandat 191.067 kb on - strandat 191.274 kb on - strand, within Ga0059261_0204at 191.274 kb on - strand, within Ga0059261_0204at 191.360 kb on + strand, within Ga0059261_0204at 191.361 kb on - strand, within Ga0059261_0204at 191.361 kb on - strand, within Ga0059261_0204at 191.361 kb on - strand, within Ga0059261_0204at 191.543 kb on + strand, within Ga0059261_0204at 191.544 kb on - strand, within Ga0059261_0204at 191.732 kb on - strand, within Ga0059261_0204at 191.732 kb on - strand, within Ga0059261_0204at 191.732 kb on - strand, within Ga0059261_0204at 191.790 kb on + strand, within Ga0059261_0204at 191.844 kb on - strand, within Ga0059261_0204at 191.844 kb on - strand, within Ga0059261_0204at 191.957 kb on + strandat 191.958 kb on - strand, within Ga0059261_0204at 191.958 kb on - strand, within Ga0059261_0204at 191.958 kb on - strand, within Ga0059261_0204at 191.958 kb on - strand, within Ga0059261_0204at 192.204 kb on - strandat 192.213 kb on - strandat 192.213 kb on - strandat 192.213 kb on - strandat 192.260 kb on - strandat 192.261 kb on + strandat 192.383 kb on + strandat 192.383 kb on + strandat 192.384 kb on - strandat 192.384 kb on - strandat 192.642 kb on - strand, within Ga0059261_0205at 192.642 kb on - strand, within Ga0059261_0205at 192.642 kb on - strand, within Ga0059261_0205at 192.815 kb on + strand, within Ga0059261_0205at 192.815 kb on + strand, within Ga0059261_0205at 192.815 kb on + strand, within Ga0059261_0205at 192.815 kb on + strand, within Ga0059261_0205at 192.815 kb on + strand, within Ga0059261_0205at 192.815 kb on + strand, within Ga0059261_0205at 192.816 kb on - strand, within Ga0059261_0205at 192.816 kb on - strand, within Ga0059261_0205at 192.816 kb on - strand, within Ga0059261_0205at 192.816 kb on - strand, within Ga0059261_0205at 192.816 kb on - strand, within Ga0059261_0205at 192.816 kb on - strand, within Ga0059261_0205at 192.900 kb on + strandat 192.900 kb on + strandat 192.900 kb on + strandat 192.901 kb on - strandat 192.901 kb on - strandat 192.920 kb on + strandat 192.920 kb on + strandat 192.921 kb on - strandat 192.921 kb on - strandat 192.929 kb on + strandat 192.930 kb on - strandat 193.038 kb on - strandat 193.038 kb on - strandat 193.135 kb on - strand, within Ga0059261_0206at 193.170 kb on + strand, within Ga0059261_0206at 193.170 kb on + strandat 193.170 kb on + strand, within Ga0059261_0206at 193.170 kb on + strand, within Ga0059261_0206at 193.170 kb on + strand, within Ga0059261_0206at 193.170 kb on + strand, within Ga0059261_0206at 193.170 kb on + strand, within Ga0059261_0206at 193.170 kb on + strand, within Ga0059261_0206at 193.170 kb on + strand, within Ga0059261_0206at 193.170 kb on + strand, within Ga0059261_0206at 193.170 kb on + strand, within Ga0059261_0206at 193.170 kb on + strand, within Ga0059261_0206at 193.170 kb on + strand, within Ga0059261_0206at 193.170 kb on + strand, within Ga0059261_0206at 193.170 kb on + strandat 193.170 kb on + strand, within Ga0059261_0206at 193.170 kb on + strand, within Ga0059261_0206at 193.170 kb on + strand, within Ga0059261_0206at 193.170 kb on + strand, within Ga0059261_0206at 193.170 kb on + strand, within Ga0059261_0206at 193.170 kb on + strand, within Ga0059261_0206at 193.170 kb on + strand, within Ga0059261_0206at 193.171 kb on - strand, within Ga0059261_0206at 193.171 kb on - strand, within Ga0059261_0206at 193.171 kb on - strand, within Ga0059261_0206at 193.171 kb on - strand, within Ga0059261_0206at 193.171 kb on - strand, within Ga0059261_0206at 193.171 kb on - strand, within Ga0059261_0206at 193.171 kb on - strand, within Ga0059261_0206at 193.171 kb on - strand, within Ga0059261_0206at 193.171 kb on - strand, within Ga0059261_0206at 193.171 kb on - strand, within Ga0059261_0206at 193.171 kb on - strand, within Ga0059261_0206at 193.171 kb on - strand, within Ga0059261_0206at 193.171 kb on - strand, within Ga0059261_0206at 193.171 kb on - strand, within Ga0059261_0206at 193.171 kb on - strand, within Ga0059261_0206at 193.171 kb on - strand, within Ga0059261_0206at 193.171 kb on - strand, within Ga0059261_0206at 193.171 kb on - strand, within Ga0059261_0206at 193.173 kb on + strand, within Ga0059261_0206at 193.173 kb on + strand, within Ga0059261_0206at 193.173 kb on + strand, within Ga0059261_0206at 193.173 kb on + strand, within Ga0059261_0206at 193.174 kb on - strand, within Ga0059261_0206

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol%
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190,422 + Ga0059261_0203 0.18 -0.1
190,422 + Ga0059261_0203 0.18 +0.3
190,422 + Ga0059261_0203 0.18 -0.5
190,582 + Ga0059261_0203 0.50 +0.1
190,582 + Ga0059261_0203 0.50 +0.4
190,583 - Ga0059261_0203 0.50 +0.6
190,583 - Ga0059261_0203 0.50 +0.3
190,584 + Ga0059261_0203 0.50 +0.9
190,584 + Ga0059261_0203 0.50 +0.5
190,585 - Ga0059261_0203 0.50 +0.7
190,585 - Ga0059261_0203 0.50 +0.1
190,909 + +0.7
190,909 + -0.4
190,909 + +0.1
190,910 - +1.0
190,910 - -0.3
190,929 - +0.6
190,929 - +0.1
190,929 - -0.4
191,011 - -0.5
191,031 + +0.2
191,032 - +0.0
191,067 - -1.1
191,274 - Ga0059261_0204 0.15 -1.9
191,274 - Ga0059261_0204 0.15 -0.9
191,360 + Ga0059261_0204 0.23 +0.7
191,361 - Ga0059261_0204 0.24 -0.9
191,361 - Ga0059261_0204 0.24 -0.3
191,361 - Ga0059261_0204 0.24 -2.9
191,543 + Ga0059261_0204 0.40 -0.1
191,544 - Ga0059261_0204 0.40 -0.9
191,732 - Ga0059261_0204 0.58 +0.7
191,732 - Ga0059261_0204 0.58 -2.3
191,732 - Ga0059261_0204 0.58 -2.3
191,790 + Ga0059261_0204 0.63 -2.1
191,844 - Ga0059261_0204 0.68 -3.0
191,844 - Ga0059261_0204 0.68 -0.9
191,957 + -1.3
191,958 - Ga0059261_0204 0.79 -1.2
191,958 - Ga0059261_0204 0.79 -1.9
191,958 - Ga0059261_0204 0.79 -1.3
191,958 - Ga0059261_0204 0.79 -2.1
192,204 - +0.8
192,213 - +0.3
192,213 - +0.3
192,213 - +0.3
192,260 - -0.1
192,261 + -0.3
192,383 + +0.1
192,383 + +0.3
192,384 - -0.5
192,384 - +0.1
192,642 - Ga0059261_0205 0.56 -0.7
192,642 - Ga0059261_0205 0.56 +0.6
192,642 - Ga0059261_0205 0.56 -0.2
192,815 + Ga0059261_0205 0.87 +0.0
192,815 + Ga0059261_0205 0.87 +0.2
192,815 + Ga0059261_0205 0.87 -0.2
192,815 + Ga0059261_0205 0.87 -0.2
192,815 + Ga0059261_0205 0.87 -0.4
192,815 + Ga0059261_0205 0.87 -0.8
192,816 - Ga0059261_0205 0.87 -0.6
192,816 - Ga0059261_0205 0.87 +0.3
192,816 - Ga0059261_0205 0.87 +0.3
192,816 - Ga0059261_0205 0.87 +0.6
192,816 - Ga0059261_0205 0.87 +0.5
192,816 - Ga0059261_0205 0.87 +0.9
192,900 + +0.1
192,900 + +1.1
192,900 + +0.2
192,901 - -0.2
192,901 - -0.9
192,920 + -0.5
192,920 + -0.7
192,921 - +0.5
192,921 - -0.7
192,929 + -0.0
192,930 - +1.4
193,038 - +2.7
193,038 - -0.4
193,135 - Ga0059261_0206 0.15 -0.6
193,170 + Ga0059261_0206 0.19 -0.1
193,170 + -0.3
193,170 + Ga0059261_0206 0.19 -1.2
193,170 + Ga0059261_0206 0.19 +0.5
193,170 + Ga0059261_0206 0.19 -0.3
193,170 + Ga0059261_0206 0.19 +1.1
193,170 + Ga0059261_0206 0.19 -0.4
193,170 + Ga0059261_0206 0.19 -0.5
193,170 + Ga0059261_0206 0.19 +0.3
193,170 + Ga0059261_0206 0.19 -0.3
193,170 + Ga0059261_0206 0.19 -0.3
193,170 + Ga0059261_0206 0.19 +0.1
193,170 + Ga0059261_0206 0.19 +0.4
193,170 + Ga0059261_0206 0.19 +0.9
193,170 + +0.3
193,170 + Ga0059261_0206 0.19 -0.5
193,170 + Ga0059261_0206 0.19 -0.5
193,170 + Ga0059261_0206 0.19 +0.4
193,170 + Ga0059261_0206 0.19 +1.6
193,170 + Ga0059261_0206 0.19 +0.0
193,170 + Ga0059261_0206 0.19 -0.0
193,170 + Ga0059261_0206 0.19 +0.6
193,171 - Ga0059261_0206 0.19 -0.3
193,171 - Ga0059261_0206 0.19 -0.4
193,171 - Ga0059261_0206 0.19 +1.0
193,171 - Ga0059261_0206 0.19 +0.5
193,171 - Ga0059261_0206 0.19 -0.2
193,171 - Ga0059261_0206 0.19 -0.3
193,171 - Ga0059261_0206 0.19 -0.1
193,171 - Ga0059261_0206 0.19 +0.2
193,171 - Ga0059261_0206 0.19 +0.4
193,171 - Ga0059261_0206 0.19 -0.3
193,171 - Ga0059261_0206 0.19 -0.6
193,171 - Ga0059261_0206 0.19 +0.5
193,171 - Ga0059261_0206 0.19 +0.2
193,171 - Ga0059261_0206 0.19 -0.2
193,171 - Ga0059261_0206 0.19 -0.1
193,171 - Ga0059261_0206 0.19 -0.3
193,171 - Ga0059261_0206 0.19 +0.2
193,171 - Ga0059261_0206 0.19 +0.1
193,173 + Ga0059261_0206 0.19 +0.2
193,173 + Ga0059261_0206 0.19 +0.2
193,173 + Ga0059261_0206 0.19 +0.5
193,173 + Ga0059261_0206 0.19 +0.7
193,174 - Ga0059261_0206 0.19 +0.7

Or see this region's nucleotide sequence