Experiment: PYE with Aluminum chloride 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02000 and CCNA_02001 are separated by 312 nucleotides CCNA_02001 and CCNA_02002 are separated by 12 nucleotides CCNA_02002 and CCNA_02003 are separated by 167 nucleotides
CCNA_02000: CCNA_02000 - SSU ribosomal protein S2P, at 2,146,328 to 2,147,134
_02000
CCNA_02001: CCNA_02001 - phosphoserine phosphatase, at 2,147,447 to 2,148,097
_02001
CCNA_02002: CCNA_02002 - methyltransferase, at 2,148,110 to 2,148,739
_02002
CCNA_02003: CCNA_02003 - DNA polymerase III alpha subunit, at 2,148,907 to 2,152,338
_02003
Position (kb)
2148
2149 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2147.423 kb on - strand at 2147.428 kb on - strand at 2147.440 kb on + strand at 2147.530 kb on - strand, within CCNA_02001 at 2147.532 kb on - strand, within CCNA_02001 at 2147.534 kb on + strand, within CCNA_02001 at 2147.564 kb on - strand, within CCNA_02001 at 2147.599 kb on - strand, within CCNA_02001 at 2147.618 kb on + strand, within CCNA_02001 at 2147.659 kb on - strand, within CCNA_02001 at 2147.731 kb on + strand, within CCNA_02001 at 2147.731 kb on + strand, within CCNA_02001 at 2147.749 kb on - strand, within CCNA_02001 at 2147.750 kb on - strand, within CCNA_02001 at 2147.803 kb on - strand, within CCNA_02001 at 2147.818 kb on + strand at 2147.826 kb on - strand, within CCNA_02001 at 2147.826 kb on - strand, within CCNA_02001 at 2147.826 kb on - strand, within CCNA_02001 at 2147.826 kb on - strand, within CCNA_02001 at 2147.826 kb on - strand, within CCNA_02001 at 2147.860 kb on + strand, within CCNA_02001 at 2147.865 kb on + strand, within CCNA_02001 at 2147.865 kb on + strand, within CCNA_02001 at 2147.865 kb on + strand, within CCNA_02001 at 2147.865 kb on + strand, within CCNA_02001 at 2147.865 kb on + strand, within CCNA_02001 at 2147.868 kb on - strand, within CCNA_02001 at 2147.873 kb on - strand, within CCNA_02001 at 2147.873 kb on - strand, within CCNA_02001 at 2147.873 kb on - strand, within CCNA_02001 at 2147.912 kb on + strand, within CCNA_02001 at 2147.923 kb on + strand, within CCNA_02001 at 2147.923 kb on + strand, within CCNA_02001 at 2147.924 kb on + strand, within CCNA_02001 at 2147.926 kb on - strand, within CCNA_02001 at 2147.951 kb on + strand, within CCNA_02001 at 2147.957 kb on + strand, within CCNA_02001 at 2147.957 kb on + strand, within CCNA_02001 at 2147.957 kb on + strand, within CCNA_02001 at 2147.979 kb on - strand, within CCNA_02001 at 2147.984 kb on - strand, within CCNA_02001 at 2148.050 kb on + strand at 2148.067 kb on + strand at 2148.086 kb on - strand at 2148.103 kb on + strand at 2148.112 kb on + strand at 2148.117 kb on + strand at 2148.120 kb on - strand at 2148.120 kb on - strand at 2148.125 kb on - strand at 2148.133 kb on + strand at 2148.138 kb on + strand at 2148.146 kb on - strand at 2148.146 kb on - strand at 2148.164 kb on - strand at 2148.164 kb on - strand at 2148.164 kb on - strand at 2148.171 kb on + strand at 2148.180 kb on - strand, within CCNA_02002 at 2148.187 kb on - strand, within CCNA_02002 at 2148.201 kb on - strand, within CCNA_02002 at 2148.201 kb on - strand, within CCNA_02002 at 2148.227 kb on + strand, within CCNA_02002 at 2148.227 kb on + strand, within CCNA_02002 at 2148.295 kb on + strand, within CCNA_02002 at 2148.333 kb on + strand, within CCNA_02002 at 2148.350 kb on - strand, within CCNA_02002 at 2148.350 kb on - strand, within CCNA_02002 at 2148.377 kb on - strand, within CCNA_02002 at 2148.377 kb on - strand, within CCNA_02002 at 2148.378 kb on + strand, within CCNA_02002 at 2148.386 kb on - strand, within CCNA_02002 at 2148.427 kb on + strand, within CCNA_02002 at 2148.434 kb on - strand, within CCNA_02002 at 2148.445 kb on - strand, within CCNA_02002 at 2148.463 kb on + strand, within CCNA_02002 at 2148.474 kb on + strand, within CCNA_02002 at 2148.474 kb on + strand, within CCNA_02002 at 2148.482 kb on - strand, within CCNA_02002 at 2148.496 kb on + strand, within CCNA_02002 at 2148.504 kb on - strand, within CCNA_02002 at 2148.551 kb on - strand, within CCNA_02002 at 2148.559 kb on - strand, within CCNA_02002 at 2148.559 kb on - strand, within CCNA_02002 at 2148.595 kb on + strand, within CCNA_02002 at 2148.662 kb on - strand, within CCNA_02002 at 2148.662 kb on - strand, within CCNA_02002 at 2148.662 kb on - strand, within CCNA_02002 at 2148.662 kb on - strand, within CCNA_02002 at 2148.662 kb on - strand, within CCNA_02002 at 2148.675 kb on + strand, within CCNA_02002 at 2148.688 kb on + strand at 2148.696 kb on - strand at 2148.795 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Aluminum chloride 1.25 mM remove 2,147,423 - +2.7 2,147,428 - -1.2 2,147,440 + +0.9 2,147,530 - CCNA_02001 0.13 -1.6 2,147,532 - CCNA_02001 0.13 +0.8 2,147,534 + CCNA_02001 0.13 -1.2 2,147,564 - CCNA_02001 0.18 +0.4 2,147,599 - CCNA_02001 0.23 +0.2 2,147,618 + CCNA_02001 0.26 -0.4 2,147,659 - CCNA_02001 0.33 -0.9 2,147,731 + CCNA_02001 0.44 -0.4 2,147,731 + CCNA_02001 0.44 +0.7 2,147,749 - CCNA_02001 0.46 -1.7 2,147,750 - CCNA_02001 0.47 -0.9 2,147,803 - CCNA_02001 0.55 -0.9 2,147,818 + +0.1 2,147,826 - CCNA_02001 0.58 +0.4 2,147,826 - CCNA_02001 0.58 +1.7 2,147,826 - CCNA_02001 0.58 +0.7 2,147,826 - CCNA_02001 0.58 -0.6 2,147,826 - CCNA_02001 0.58 -2.7 2,147,860 + CCNA_02001 0.63 +0.8 2,147,865 + CCNA_02001 0.64 -0.3 2,147,865 + CCNA_02001 0.64 +0.5 2,147,865 + CCNA_02001 0.64 -1.4 2,147,865 + CCNA_02001 0.64 +0.1 2,147,865 + CCNA_02001 0.64 -0.6 2,147,868 - CCNA_02001 0.65 -0.2 2,147,873 - CCNA_02001 0.65 -1.4 2,147,873 - CCNA_02001 0.65 +0.9 2,147,873 - CCNA_02001 0.65 -0.3 2,147,912 + CCNA_02001 0.71 +0.1 2,147,923 + CCNA_02001 0.73 +0.7 2,147,923 + CCNA_02001 0.73 -1.1 2,147,924 + CCNA_02001 0.73 -0.9 2,147,926 - CCNA_02001 0.74 +1.4 2,147,951 + CCNA_02001 0.77 +0.5 2,147,957 + CCNA_02001 0.78 +0.4 2,147,957 + CCNA_02001 0.78 -1.2 2,147,957 + CCNA_02001 0.78 -1.0 2,147,979 - CCNA_02001 0.82 -1.5 2,147,984 - CCNA_02001 0.82 -1.9 2,148,050 + -0.6 2,148,067 + -1.4 2,148,086 - -0.0 2,148,103 + -1.6 2,148,112 + +0.1 2,148,117 + -0.3 2,148,120 - -0.3 2,148,120 - +1.7 2,148,125 - -1.3 2,148,133 + +0.1 2,148,138 + -0.3 2,148,146 - +0.1 2,148,146 - -1.9 2,148,164 - +3.1 2,148,164 - +0.6 2,148,164 - +0.6 2,148,171 + -1.6 2,148,180 - CCNA_02002 0.11 -1.6 2,148,187 - CCNA_02002 0.12 -0.6 2,148,201 - CCNA_02002 0.14 -1.1 2,148,201 - CCNA_02002 0.14 +0.6 2,148,227 + CCNA_02002 0.19 +1.7 2,148,227 + CCNA_02002 0.19 -2.2 2,148,295 + CCNA_02002 0.29 +0.1 2,148,333 + CCNA_02002 0.35 -0.9 2,148,350 - CCNA_02002 0.38 -2.6 2,148,350 - CCNA_02002 0.38 -0.9 2,148,377 - CCNA_02002 0.42 +0.4 2,148,377 - CCNA_02002 0.42 -0.3 2,148,378 + CCNA_02002 0.43 +0.7 2,148,386 - CCNA_02002 0.44 -1.4 2,148,427 + CCNA_02002 0.50 -1.4 2,148,434 - CCNA_02002 0.51 -1.7 2,148,445 - CCNA_02002 0.53 +1.7 2,148,463 + CCNA_02002 0.56 -0.3 2,148,474 + CCNA_02002 0.58 +0.5 2,148,474 + CCNA_02002 0.58 -1.1 2,148,482 - CCNA_02002 0.59 -3.1 2,148,496 + CCNA_02002 0.61 -1.6 2,148,504 - CCNA_02002 0.63 -1.3 2,148,551 - CCNA_02002 0.70 -1.0 2,148,559 - CCNA_02002 0.71 +0.7 2,148,559 - CCNA_02002 0.71 -0.6 2,148,595 + CCNA_02002 0.77 -0.3 2,148,662 - CCNA_02002 0.88 -0.5 2,148,662 - CCNA_02002 0.88 +1.1 2,148,662 - CCNA_02002 0.88 +0.4 2,148,662 - CCNA_02002 0.88 -0.5 2,148,662 - CCNA_02002 0.88 -1.6 2,148,675 + CCNA_02002 0.90 +0.1 2,148,688 + +1.7 2,148,696 - -0.6 2,148,795 + -0.4
Or see this region's nucleotide sequence