Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01691

Experiment: PYE with Aluminum chloride 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01689 and CCNA_01690 are separated by 3 nucleotidesCCNA_01690 and CCNA_01691 overlap by 1 nucleotidesCCNA_01691 and CCNA_01692 are separated by 32 nucleotides CCNA_01689: CCNA_01689 - inosine-5'-monophosphate dehydrogenase, at 1,815,952 to 1,817,415 _01689 CCNA_01690: CCNA_01690 - MAPEG family membrane protein, at 1,817,419 to 1,817,814 _01690 CCNA_01691: CCNA_01691 - tRNA/rRNA methyltransferase, at 1,817,814 to 1,819,091 _01691 CCNA_01692: CCNA_01692 - GMP synthase GuaA, at 1,819,124 to 1,820,686 _01692 Position (kb) 1817 1818 1819 1820Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1817.399 kb on + strandat 1817.515 kb on + strand, within CCNA_01690at 1817.549 kb on + strand, within CCNA_01690at 1817.549 kb on + strand, within CCNA_01690at 1817.634 kb on - strand, within CCNA_01690at 1817.674 kb on - strand, within CCNA_01690at 1817.722 kb on - strand, within CCNA_01690at 1817.734 kb on + strand, within CCNA_01690at 1817.757 kb on + strand, within CCNA_01690at 1817.757 kb on + strand, within CCNA_01690at 1817.787 kb on + strandat 1817.914 kb on - strandat 1817.914 kb on - strandat 1817.995 kb on + strand, within CCNA_01691at 1818.166 kb on + strand, within CCNA_01691at 1818.229 kb on - strand, within CCNA_01691at 1818.327 kb on + strand, within CCNA_01691at 1818.335 kb on - strand, within CCNA_01691at 1818.346 kb on - strand, within CCNA_01691at 1818.348 kb on + strand, within CCNA_01691at 1818.416 kb on + strand, within CCNA_01691at 1818.417 kb on + strand, within CCNA_01691at 1818.534 kb on + strand, within CCNA_01691at 1818.572 kb on + strand, within CCNA_01691at 1818.582 kb on + strand, within CCNA_01691at 1818.688 kb on - strand, within CCNA_01691at 1818.693 kb on + strand, within CCNA_01691at 1818.693 kb on + strand, within CCNA_01691at 1818.701 kb on - strand, within CCNA_01691at 1818.703 kb on - strand, within CCNA_01691at 1818.710 kb on - strand, within CCNA_01691at 1818.815 kb on + strand, within CCNA_01691at 1818.815 kb on + strand, within CCNA_01691at 1818.820 kb on + strand, within CCNA_01691at 1818.825 kb on + strand, within CCNA_01691at 1818.825 kb on + strand, within CCNA_01691at 1818.825 kb on + strand, within CCNA_01691at 1818.830 kb on + strand, within CCNA_01691at 1818.833 kb on - strand, within CCNA_01691at 1818.885 kb on + strand, within CCNA_01691at 1818.895 kb on + strand, within CCNA_01691at 1818.926 kb on + strand, within CCNA_01691at 1818.969 kb on - strandat 1818.993 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Aluminum chloride 1.25 mM
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1,817,399 + +1.7
1,817,515 + CCNA_01690 0.24 +1.6
1,817,549 + CCNA_01690 0.33 +1.3
1,817,549 + CCNA_01690 0.33 +1.8
1,817,634 - CCNA_01690 0.54 +0.6
1,817,674 - CCNA_01690 0.64 +1.8
1,817,722 - CCNA_01690 0.77 -1.4
1,817,734 + CCNA_01690 0.80 +1.4
1,817,757 + CCNA_01690 0.85 +1.4
1,817,757 + CCNA_01690 0.85 +1.6
1,817,787 + +2.2
1,817,914 - -1.0
1,817,914 - -1.8
1,817,995 + CCNA_01691 0.14 +1.9
1,818,166 + CCNA_01691 0.28 +2.2
1,818,229 - CCNA_01691 0.32 -0.8
1,818,327 + CCNA_01691 0.40 +1.5
1,818,335 - CCNA_01691 0.41 +0.2
1,818,346 - CCNA_01691 0.42 -1.4
1,818,348 + CCNA_01691 0.42 +1.2
1,818,416 + CCNA_01691 0.47 +1.5
1,818,417 + CCNA_01691 0.47 +0.8
1,818,534 + CCNA_01691 0.56 +0.9
1,818,572 + CCNA_01691 0.59 +1.0
1,818,582 + CCNA_01691 0.60 +0.9
1,818,688 - CCNA_01691 0.68 -0.1
1,818,693 + CCNA_01691 0.69 +1.5
1,818,693 + CCNA_01691 0.69 +1.7
1,818,701 - CCNA_01691 0.69 +2.8
1,818,703 - CCNA_01691 0.70 -1.5
1,818,710 - CCNA_01691 0.70 +1.9
1,818,815 + CCNA_01691 0.78 +0.3
1,818,815 + CCNA_01691 0.78 -1.5
1,818,820 + CCNA_01691 0.79 +1.4
1,818,825 + CCNA_01691 0.79 +1.3
1,818,825 + CCNA_01691 0.79 +0.8
1,818,825 + CCNA_01691 0.79 +0.2
1,818,830 + CCNA_01691 0.79 +0.8
1,818,833 - CCNA_01691 0.80 +1.8
1,818,885 + CCNA_01691 0.84 +0.2
1,818,895 + CCNA_01691 0.85 +0.6
1,818,926 + CCNA_01691 0.87 +0.1
1,818,969 - +0.2
1,818,993 - +0.8

Or see this region's nucleotide sequence