Experiment: Rifampicin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_30095 and AO356_30100 overlap by 4 nucleotides AO356_30100 and AO356_30105 overlap by 19 nucleotides
AO356_30095: AO356_30095 - formyltetrahydrofolate deformylase, at 7,023,925 to 7,024,791
_30095
AO356_30100: AO356_30100 - bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase, at 7,024,788 to 7,025,693
_30100
AO356_30105: AO356_30105 - sarcosine oxidase subunit beta, at 7,025,675 to 7,026,916
_30105
Position (kb) 7024
7025
7026 Strain fitness (log2 ratio) -2
-1
0
1 at 7023.802 kb on - strand at 7023.803 kb on + strand at 7023.804 kb on - strand at 7023.804 kb on - strand at 7023.804 kb on - strand at 7023.887 kb on + strand at 7024.004 kb on - strand at 7024.024 kb on + strand, within AO356_30095 at 7024.025 kb on - strand, within AO356_30095 at 7024.355 kb on - strand, within AO356_30095 at 7024.451 kb on - strand, within AO356_30095 at 7024.451 kb on - strand, within AO356_30095 at 7024.451 kb on - strand, within AO356_30095 at 7024.601 kb on - strand, within AO356_30095 at 7024.601 kb on - strand, within AO356_30095 at 7024.666 kb on + strand, within AO356_30095 at 7024.667 kb on - strand, within AO356_30095 at 7024.667 kb on - strand, within AO356_30095 at 7024.667 kb on - strand, within AO356_30095 at 7024.667 kb on - strand, within AO356_30095 at 7024.935 kb on + strand at 7024.935 kb on + strand, within AO356_30100 at 7024.935 kb on + strand, within AO356_30100 at 7024.935 kb on + strand, within AO356_30100 at 7024.935 kb on + strand, within AO356_30100 at 7024.936 kb on - strand, within AO356_30100 at 7025.147 kb on - strand, within AO356_30100 at 7025.147 kb on - strand, within AO356_30100 at 7025.229 kb on + strand, within AO356_30100 at 7025.258 kb on - strand, within AO356_30100 at 7025.674 kb on + strand at 7025.688 kb on + strand at 7025.762 kb on + strand at 7025.763 kb on - strand at 7025.763 kb on - strand at 7025.770 kb on - strand at 7025.770 kb on - strand at 7025.770 kb on - strand at 7025.770 kb on - strand at 7025.770 kb on - strand at 7025.811 kb on - strand, within AO356_30105 at 7025.811 kb on - strand, within AO356_30105 at 7025.826 kb on - strand, within AO356_30105 at 7025.826 kb on - strand, within AO356_30105 at 7025.839 kb on + strand, within AO356_30105 at 7025.840 kb on - strand, within AO356_30105 at 7025.840 kb on - strand, within AO356_30105 at 7025.864 kb on + strand, within AO356_30105 at 7025.864 kb on + strand, within AO356_30105 at 7025.916 kb on - strand, within AO356_30105 at 7025.942 kb on + strand, within AO356_30105 at 7025.943 kb on - strand, within AO356_30105 at 7026.002 kb on + strand, within AO356_30105 at 7026.003 kb on - strand, within AO356_30105 at 7026.509 kb on + strand, within AO356_30105 at 7026.510 kb on - strand, within AO356_30105
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0016 mg/ml remove 7,023,802 - +0.2 7,023,803 + +0.1 7,023,804 - +0.6 7,023,804 - +1.0 7,023,804 - +0.6 7,023,887 + -0.1 7,024,004 - -0.2 7,024,024 + AO356_30095 0.11 -1.0 7,024,025 - AO356_30095 0.12 -0.6 7,024,355 - AO356_30095 0.50 +0.3 7,024,451 - AO356_30095 0.61 +0.7 7,024,451 - AO356_30095 0.61 +0.3 7,024,451 - AO356_30095 0.61 +0.7 7,024,601 - AO356_30095 0.78 -0.8 7,024,601 - AO356_30095 0.78 -0.0 7,024,666 + AO356_30095 0.85 +0.1 7,024,667 - AO356_30095 0.86 -0.2 7,024,667 - AO356_30095 0.86 -0.5 7,024,667 - AO356_30095 0.86 -0.5 7,024,667 - AO356_30095 0.86 -0.1 7,024,935 + +1.7 7,024,935 + AO356_30100 0.16 -0.4 7,024,935 + AO356_30100 0.16 +0.1 7,024,935 + AO356_30100 0.16 +0.6 7,024,935 + AO356_30100 0.16 +0.0 7,024,936 - AO356_30100 0.16 -0.4 7,025,147 - AO356_30100 0.40 -1.2 7,025,147 - AO356_30100 0.40 -0.1 7,025,229 + AO356_30100 0.49 +0.1 7,025,258 - AO356_30100 0.52 -0.8 7,025,674 + -0.5 7,025,688 + +1.0 7,025,762 + -0.2 7,025,763 - +0.3 7,025,763 - -0.4 7,025,770 - -0.6 7,025,770 - +0.5 7,025,770 - +0.2 7,025,770 - -0.2 7,025,770 - +0.7 7,025,811 - AO356_30105 0.11 -1.6 7,025,811 - AO356_30105 0.11 -1.1 7,025,826 - AO356_30105 0.12 -1.2 7,025,826 - AO356_30105 0.12 -0.1 7,025,839 + AO356_30105 0.13 +0.1 7,025,840 - AO356_30105 0.13 +0.4 7,025,840 - AO356_30105 0.13 +0.1 7,025,864 + AO356_30105 0.15 -0.0 7,025,864 + AO356_30105 0.15 -0.1 7,025,916 - AO356_30105 0.19 +0.7 7,025,942 + AO356_30105 0.21 -0.7 7,025,943 - AO356_30105 0.22 -0.6 7,026,002 + AO356_30105 0.26 -2.1 7,026,003 - AO356_30105 0.26 +0.5 7,026,509 + AO356_30105 0.67 +0.8 7,026,510 - AO356_30105 0.67 +0.1
Or see this region's nucleotide sequence