Experiment: Rifampicin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29685 and AO356_29690 are separated by 144 nucleotides AO356_29690 and AO356_29695 overlap by 8 nucleotides AO356_29695 and AO356_29700 overlap by 1 nucleotides
AO356_29685: AO356_29685 - ABC transporter substrate-binding protein, at 6,905,276 to 6,906,100
_29685
AO356_29690: AO356_29690 - polysaccharide deacetylase, at 6,906,245 to 6,907,087
_29690
AO356_29695: AO356_29695 - polysaccharide deacetylase, at 6,907,080 to 6,907,964
_29695
AO356_29700: AO356_29700 - 2-methylcitrate dehydratase, at 6,907,964 to 6,909,313
_29700
Position (kb)
6907
6908 Strain fitness (log2 ratio)
-1
0
1 at 6906.704 kb on + strand, within AO356_29690 at 6906.737 kb on + strand, within AO356_29690 at 6906.737 kb on + strand, within AO356_29690 at 6906.737 kb on + strand, within AO356_29690 at 6906.738 kb on - strand, within AO356_29690 at 6906.822 kb on - strand, within AO356_29690 at 6906.860 kb on - strand, within AO356_29690 at 6906.903 kb on - strand, within AO356_29690 at 6906.903 kb on - strand, within AO356_29690 at 6906.964 kb on + strand, within AO356_29690 at 6907.126 kb on + strand at 6907.141 kb on - strand at 6907.383 kb on + strand, within AO356_29695 at 6907.618 kb on - strand, within AO356_29695 at 6907.618 kb on - strand, within AO356_29695 at 6907.758 kb on + strand, within AO356_29695 at 6907.936 kb on - strand at 6907.936 kb on - strand at 6908.022 kb on + strand at 6908.023 kb on - strand at 6908.472 kb on + strand, within AO356_29700 at 6908.473 kb on - strand, within AO356_29700 at 6908.772 kb on - strand, within AO356_29700 at 6908.820 kb on + strand, within AO356_29700 at 6908.948 kb on + strand, within AO356_29700 at 6908.948 kb on + strand, within AO356_29700
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0016 mg/ml remove 6,906,704 + AO356_29690 0.54 +0.4 6,906,737 + AO356_29690 0.58 +1.5 6,906,737 + AO356_29690 0.58 -0.4 6,906,737 + AO356_29690 0.58 -1.3 6,906,738 - AO356_29690 0.58 +1.6 6,906,822 - AO356_29690 0.68 +0.9 6,906,860 - AO356_29690 0.73 +1.0 6,906,903 - AO356_29690 0.78 -0.1 6,906,903 - AO356_29690 0.78 +0.1 6,906,964 + AO356_29690 0.85 +1.1 6,907,126 + +0.8 6,907,141 - -0.2 6,907,383 + AO356_29695 0.34 -0.4 6,907,618 - AO356_29695 0.61 -0.7 6,907,618 - AO356_29695 0.61 -0.9 6,907,758 + AO356_29695 0.77 -0.1 6,907,936 - -1.2 6,907,936 - +0.7 6,908,022 + +0.5 6,908,023 - +0.7 6,908,472 + AO356_29700 0.38 +0.1 6,908,473 - AO356_29700 0.38 +0.7 6,908,772 - AO356_29700 0.60 +0.3 6,908,820 + AO356_29700 0.63 -0.3 6,908,948 + AO356_29700 0.73 +0.2 6,908,948 + AO356_29700 0.73 +0.4
Or see this region's nucleotide sequence