Experiment: Rifampicin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29095 and AO356_29100 overlap by 14 nucleotides AO356_29100 and AO356_29105 overlap by 10 nucleotides AO356_29105 and AO356_29110 overlap by 4 nucleotides AO356_29110 and AO356_29115 are separated by 63 nucleotides
AO356_29095: AO356_29095 - cyclase, at 6,764,731 to 6,765,516
_29095
AO356_29100: AO356_29100 - epimerase, at 6,765,503 to 6,766,510
_29100
AO356_29105: AO356_29105 - fumarylacetoacetate hydrolase, at 6,766,501 to 6,767,493
_29105
AO356_29110: AO356_29110 - cupin, at 6,767,490 to 6,768,062
_29110
AO356_29115: AO356_29115 - Vanillate O-demethylase oxidoreductase, at 6,768,126 to 6,769,079
_29115
Position (kb) 6766
6767
6768 Strain fitness (log2 ratio) -1
0
1 at 6765.587 kb on + strand at 6766.078 kb on - strand, within AO356_29100 at 6766.246 kb on - strand, within AO356_29100 at 6767.167 kb on - strand, within AO356_29105 at 6767.167 kb on - strand, within AO356_29105 at 6767.167 kb on - strand, within AO356_29105 at 6768.427 kb on + strand, within AO356_29115 at 6768.427 kb on + strand, within AO356_29115
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0016 mg/ml remove 6,765,587 + +0.6 6,766,078 - AO356_29100 0.57 -0.7 6,766,246 - AO356_29100 0.74 +0.2 6,767,167 - AO356_29105 0.67 -0.6 6,767,167 - AO356_29105 0.67 +0.4 6,767,167 - AO356_29105 0.67 -1.0 6,768,427 + AO356_29115 0.32 +0.6 6,768,427 + AO356_29115 0.32 -0.1
Or see this region's nucleotide sequence