Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28580

Experiment: Rifampicin 0.0016 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_28570 and AO356_28575 are separated by 21 nucleotidesAO356_28575 and AO356_28580 overlap by 4 nucleotidesAO356_28580 and AO356_28585 are separated by 32 nucleotides AO356_28570: AO356_28570 - ABC transporter substrate-binding protein, at 6,641,076 to 6,642,350 _28570 AO356_28575: AO356_28575 - ABC transporter permease, at 6,642,372 to 6,643,334 _28575 AO356_28580: AO356_28580 - sugar ABC transporter permease, at 6,643,331 to 6,644,173 _28580 AO356_28585: AO356_28585 - ABC transporter, at 6,644,206 to 6,645,345 _28585 Position (kb) 6643 6644 6645Strain fitness (log2 ratio) -1 0 1at 6642.409 kb on - strandat 6642.522 kb on - strand, within AO356_28575at 6643.152 kb on + strand, within AO356_28575at 6643.152 kb on + strand, within AO356_28575at 6643.152 kb on + strand, within AO356_28575at 6643.153 kb on - strand, within AO356_28575at 6643.153 kb on - strand, within AO356_28575at 6643.153 kb on - strand, within AO356_28575at 6643.153 kb on - strand, within AO356_28575at 6643.153 kb on - strand, within AO356_28575at 6643.425 kb on - strand, within AO356_28580at 6643.435 kb on - strand, within AO356_28580at 6643.740 kb on - strand, within AO356_28580at 6644.482 kb on + strand, within AO356_28585at 6644.770 kb on + strand, within AO356_28585at 6644.771 kb on - strand, within AO356_28585at 6644.870 kb on - strand, within AO356_28585at 6644.946 kb on + strand, within AO356_28585at 6644.947 kb on - strand, within AO356_28585at 6645.030 kb on + strand, within AO356_28585at 6645.136 kb on + strand, within AO356_28585

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.0016 mg/ml
remove
6,642,409 - +0.6
6,642,522 - AO356_28575 0.16 -0.9
6,643,152 + AO356_28575 0.81 -0.1
6,643,152 + AO356_28575 0.81 -0.3
6,643,152 + AO356_28575 0.81 -1.5
6,643,153 - AO356_28575 0.81 +0.9
6,643,153 - AO356_28575 0.81 -0.2
6,643,153 - AO356_28575 0.81 +0.0
6,643,153 - AO356_28575 0.81 +0.6
6,643,153 - AO356_28575 0.81 +0.3
6,643,425 - AO356_28580 0.11 -0.7
6,643,435 - AO356_28580 0.12 -1.3
6,643,740 - AO356_28580 0.49 -0.3
6,644,482 + AO356_28585 0.24 -1.3
6,644,770 + AO356_28585 0.49 -0.4
6,644,771 - AO356_28585 0.50 +0.5
6,644,870 - AO356_28585 0.58 +0.0
6,644,946 + AO356_28585 0.65 +0.8
6,644,947 - AO356_28585 0.65 +0.8
6,645,030 + AO356_28585 0.72 -0.4
6,645,136 + AO356_28585 0.82 +0.3

Or see this region's nucleotide sequence