Experiment: Rifampicin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25550 and AO356_25555 are separated by 266 nucleotides AO356_25555 and AO356_25560 are separated by 139 nucleotides AO356_25560 and AO356_25565 are separated by 14 nucleotides AO356_25565 and AO356_25570 are separated by 12 nucleotides
AO356_25550: AO356_25550 - flavin oxidoreductase, at 5,776,620 to 5,777,561
_25550
AO356_25555: AO356_25555 - transcriptional regulator, at 5,777,828 to 5,778,250
_25555
AO356_25560: AO356_25560 - 2-keto-3-deoxy-L-rhamnonate aldolase, at 5,778,390 to 5,779,187
_25560
AO356_25565: AO356_25565 - 2-oxo-hepta-3-ene-1,7-dioate hydratase, at 5,779,202 to 5,780,005
_25565
AO356_25570: AO356_25570 - MFS transporter, at 5,780,018 to 5,781,322
_25570
Position (kb) 5778
5779
5780 Strain fitness (log2 ratio) -1
0
1 at 5777.699 kb on + strand at 5777.866 kb on - strand at 5777.866 kb on - strand at 5778.164 kb on + strand, within AO356_25555 at 5778.164 kb on + strand, within AO356_25555 at 5778.165 kb on - strand, within AO356_25555 at 5778.377 kb on + strand at 5778.378 kb on - strand at 5778.834 kb on + strand, within AO356_25560 at 5778.834 kb on + strand, within AO356_25560 at 5779.102 kb on + strand, within AO356_25560 at 5779.102 kb on + strand, within AO356_25560 at 5779.103 kb on - strand, within AO356_25560 at 5779.103 kb on - strand, within AO356_25560 at 5779.767 kb on + strand, within AO356_25565 at 5779.888 kb on - strand, within AO356_25565 at 5780.020 kb on - strand at 5780.090 kb on + strand at 5780.091 kb on - strand at 5780.095 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0016 mg/ml remove 5,777,699 + +0.5 5,777,866 - +0.7 5,777,866 - -1.2 5,778,164 + AO356_25555 0.79 -0.3 5,778,164 + AO356_25555 0.79 +0.2 5,778,165 - AO356_25555 0.80 -0.0 5,778,377 + +0.1 5,778,378 - +0.2 5,778,834 + AO356_25560 0.56 -0.4 5,778,834 + AO356_25560 0.56 -1.1 5,779,102 + AO356_25560 0.89 -0.8 5,779,102 + AO356_25560 0.89 -0.3 5,779,103 - AO356_25560 0.89 -0.0 5,779,103 - AO356_25560 0.89 -0.3 5,779,767 + AO356_25565 0.70 -0.5 5,779,888 - AO356_25565 0.85 -0.4 5,780,020 - -0.7 5,780,090 + -0.3 5,780,091 - -0.4 5,780,095 - +0.2
Or see this region's nucleotide sequence