Experiment: Rifampicin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25525 and AO356_25530 are separated by 79 nucleotides AO356_25530 and AO356_25535 are separated by 51 nucleotides AO356_25535 and AO356_25540 are separated by 44 nucleotides
AO356_25525: AO356_25525 - moaF, at 5,771,756 to 5,772,577
_25525
AO356_25530: AO356_25530 - LuxR family transcriptional regulator, at 5,772,657 to 5,773,313
_25530
AO356_25535: AO356_25535 - hypothetical protein, at 5,773,365 to 5,773,730
_25535
AO356_25540: AO356_25540 - FAD-dependent oxidoreductase, at 5,773,775 to 5,775,073
_25540
Position (kb) 5773
5774 Strain fitness (log2 ratio) -1
0
1 at 5772.566 kb on - strand at 5772.601 kb on + strand at 5772.795 kb on + strand, within AO356_25530 at 5773.231 kb on + strand, within AO356_25530 at 5773.232 kb on - strand, within AO356_25530 at 5773.381 kb on + strand at 5773.462 kb on + strand, within AO356_25535 at 5773.462 kb on + strand, within AO356_25535 at 5773.896 kb on + strand at 5774.235 kb on + strand, within AO356_25540 at 5774.236 kb on - strand, within AO356_25540 at 5774.307 kb on + strand, within AO356_25540 at 5774.430 kb on + strand, within AO356_25540 at 5774.431 kb on - strand, within AO356_25540 at 5774.559 kb on + strand, within AO356_25540 at 5774.692 kb on - strand, within AO356_25540 at 5774.692 kb on - strand, within AO356_25540 at 5774.727 kb on + strand, within AO356_25540
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0016 mg/ml remove 5,772,566 - +0.6 5,772,601 + -0.4 5,772,795 + AO356_25530 0.21 -0.4 5,773,231 + AO356_25530 0.87 +0.0 5,773,232 - AO356_25530 0.88 +0.7 5,773,381 + +0.3 5,773,462 + AO356_25535 0.27 -1.2 5,773,462 + AO356_25535 0.27 -0.6 5,773,896 + -0.6 5,774,235 + AO356_25540 0.35 -0.4 5,774,236 - AO356_25540 0.35 +1.1 5,774,307 + AO356_25540 0.41 -0.3 5,774,430 + AO356_25540 0.50 +0.6 5,774,431 - AO356_25540 0.51 +0.9 5,774,559 + AO356_25540 0.60 -0.0 5,774,692 - AO356_25540 0.71 +0.1 5,774,692 - AO356_25540 0.71 +0.3 5,774,727 + AO356_25540 0.73 -0.6
Or see this region's nucleotide sequence