Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_24170

Experiment: Rifampicin 0.0016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_24165 and AO356_24170 overlap by 4 nucleotidesAO356_24170 and AO356_24175 overlap by 4 nucleotidesAO356_24175 and AO356_24180 are separated by 89 nucleotides AO356_24165: AO356_24165 - formate dehydrogenase, at 5,418,216 to 5,419,775 _24165 AO356_24170: AO356_24170 - formate dehydrogenase, at 5,419,772 to 5,422,648 _24170 AO356_24175: AO356_24175 - formate dehydrogenase, at 5,422,645 to 5,422,866 _24175 AO356_24180: AO356_24180 - nematocidal protein, at 5,422,956 to 5,423,486 _24180 Position (kb) 5419 5420 5421 5422 5423Strain fitness (log2 ratio) -2 -1 0 1 2at 5418.788 kb on + strand, within AO356_24165at 5418.788 kb on + strand, within AO356_24165at 5418.788 kb on + strand, within AO356_24165at 5418.788 kb on + strand, within AO356_24165at 5418.788 kb on + strand, within AO356_24165at 5418.789 kb on - strand, within AO356_24165at 5418.789 kb on - strand, within AO356_24165at 5418.789 kb on - strand, within AO356_24165at 5418.789 kb on - strand, within AO356_24165at 5418.867 kb on + strand, within AO356_24165at 5418.867 kb on + strand, within AO356_24165at 5418.867 kb on + strand, within AO356_24165at 5418.868 kb on - strand, within AO356_24165at 5418.868 kb on - strand, within AO356_24165at 5418.868 kb on - strand, within AO356_24165at 5418.868 kb on - strand, within AO356_24165at 5418.868 kb on - strand, within AO356_24165at 5418.869 kb on + strand, within AO356_24165at 5418.869 kb on + strand, within AO356_24165at 5418.870 kb on - strand, within AO356_24165at 5418.870 kb on - strand, within AO356_24165at 5418.870 kb on - strand, within AO356_24165at 5418.870 kb on - strand, within AO356_24165at 5418.870 kb on - strand, within AO356_24165at 5418.870 kb on - strand, within AO356_24165at 5418.873 kb on + strand, within AO356_24165at 5418.873 kb on + strand, within AO356_24165at 5418.873 kb on + strand, within AO356_24165at 5418.873 kb on + strand, within AO356_24165at 5418.873 kb on + strand, within AO356_24165at 5418.874 kb on - strand, within AO356_24165at 5418.874 kb on - strand, within AO356_24165at 5418.874 kb on - strand, within AO356_24165at 5418.874 kb on - strand, within AO356_24165at 5418.874 kb on - strand, within AO356_24165at 5418.906 kb on - strand, within AO356_24165at 5419.014 kb on + strand, within AO356_24165at 5419.014 kb on + strand, within AO356_24165at 5419.014 kb on + strand, within AO356_24165at 5419.014 kb on + strand, within AO356_24165at 5419.014 kb on + strand, within AO356_24165at 5419.014 kb on + strand, within AO356_24165at 5419.014 kb on + strand, within AO356_24165at 5419.014 kb on + strand, within AO356_24165at 5419.015 kb on - strand, within AO356_24165at 5419.015 kb on - strand, within AO356_24165at 5419.015 kb on - strand, within AO356_24165at 5419.015 kb on - strand, within AO356_24165at 5419.016 kb on + strand, within AO356_24165at 5419.016 kb on + strand, within AO356_24165at 5419.017 kb on - strand, within AO356_24165at 5419.017 kb on - strand, within AO356_24165at 5419.017 kb on - strand, within AO356_24165at 5419.017 kb on - strand, within AO356_24165at 5419.134 kb on - strand, within AO356_24165at 5419.134 kb on - strand, within AO356_24165at 5419.188 kb on + strand, within AO356_24165at 5419.311 kb on + strand, within AO356_24165at 5419.669 kb on - strandat 5419.777 kb on + strandat 5420.105 kb on + strand, within AO356_24170at 5420.105 kb on + strand, within AO356_24170at 5420.105 kb on + strand, within AO356_24170at 5420.105 kb on + strand, within AO356_24170at 5420.106 kb on - strand, within AO356_24170at 5420.106 kb on - strand, within AO356_24170at 5420.205 kb on - strand, within AO356_24170at 5420.210 kb on + strand, within AO356_24170at 5420.210 kb on + strand, within AO356_24170at 5420.267 kb on + strand, within AO356_24170at 5420.433 kb on + strand, within AO356_24170at 5420.433 kb on + strand, within AO356_24170at 5420.520 kb on - strand, within AO356_24170at 5420.738 kb on + strand, within AO356_24170at 5420.774 kb on + strand, within AO356_24170at 5420.832 kb on - strand, within AO356_24170at 5420.832 kb on - strand, within AO356_24170at 5421.322 kb on - strand, within AO356_24170at 5421.356 kb on + strand, within AO356_24170at 5421.357 kb on - strand, within AO356_24170at 5421.383 kb on + strand, within AO356_24170at 5421.383 kb on + strand, within AO356_24170at 5421.384 kb on - strand, within AO356_24170at 5421.384 kb on - strand, within AO356_24170at 5421.384 kb on - strand, within AO356_24170at 5421.384 kb on - strand, within AO356_24170at 5421.386 kb on + strand, within AO356_24170at 5421.696 kb on - strand, within AO356_24170at 5421.696 kb on - strand, within AO356_24170at 5421.696 kb on - strand, within AO356_24170at 5421.866 kb on - strand, within AO356_24170at 5421.866 kb on - strand, within AO356_24170at 5421.883 kb on + strand, within AO356_24170at 5421.968 kb on + strand, within AO356_24170at 5421.980 kb on + strand, within AO356_24170at 5421.981 kb on - strand, within AO356_24170at 5421.981 kb on - strand, within AO356_24170at 5421.981 kb on - strand, within AO356_24170at 5421.981 kb on - strand, within AO356_24170at 5422.047 kb on - strand, within AO356_24170at 5422.047 kb on - strand, within AO356_24170at 5422.241 kb on + strand, within AO356_24170at 5422.241 kb on + strand, within AO356_24170at 5422.242 kb on - strand, within AO356_24170at 5422.242 kb on - strand, within AO356_24170at 5422.386 kb on + strandat 5422.430 kb on + strandat 5422.430 kb on + strandat 5422.431 kb on - strandat 5422.511 kb on + strandat 5422.511 kb on + strandat 5422.512 kb on - strandat 5422.512 kb on - strandat 5422.512 kb on - strandat 5422.537 kb on - strandat 5422.690 kb on + strand, within AO356_24175at 5422.690 kb on + strand, within AO356_24175at 5422.690 kb on + strand, within AO356_24175at 5422.735 kb on + strand, within AO356_24175at 5422.735 kb on + strand, within AO356_24175at 5422.736 kb on - strand, within AO356_24175at 5422.736 kb on - strand, within AO356_24175at 5422.736 kb on - strand, within AO356_24175at 5422.864 kb on + strandat 5422.947 kb on - strandat 5422.947 kb on - strandat 5422.957 kb on + strandat 5422.957 kb on + strandat 5422.957 kb on + strandat 5422.978 kb on + strandat 5422.978 kb on + strandat 5422.979 kb on - strandat 5422.979 kb on - strandat 5423.048 kb on - strand, within AO356_24180at 5423.090 kb on + strand, within AO356_24180at 5423.090 kb on + strand, within AO356_24180at 5423.091 kb on - strand, within AO356_24180at 5423.091 kb on - strand, within AO356_24180at 5423.092 kb on + strand, within AO356_24180at 5423.092 kb on + strand, within AO356_24180at 5423.092 kb on + strand, within AO356_24180at 5423.092 kb on + strand, within AO356_24180at 5423.092 kb on + strand, within AO356_24180at 5423.092 kb on + strand, within AO356_24180at 5423.093 kb on - strand, within AO356_24180at 5423.093 kb on - strand, within AO356_24180at 5423.140 kb on + strand, within AO356_24180at 5423.197 kb on + strand, within AO356_24180at 5423.197 kb on + strand, within AO356_24180at 5423.198 kb on - strand, within AO356_24180at 5423.198 kb on - strand, within AO356_24180at 5423.307 kb on + strand, within AO356_24180at 5423.307 kb on + strand, within AO356_24180at 5423.579 kb on + strandat 5423.580 kb on - strandat 5423.594 kb on + strandat 5423.594 kb on + strandat 5423.595 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.0016 mg/ml
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5,418,788 + AO356_24165 0.37 +0.1
5,418,788 + AO356_24165 0.37 -0.3
5,418,788 + AO356_24165 0.37 -0.1
5,418,788 + AO356_24165 0.37 -0.0
5,418,788 + AO356_24165 0.37 -0.1
5,418,789 - AO356_24165 0.37 +0.5
5,418,789 - AO356_24165 0.37 +0.4
5,418,789 - AO356_24165 0.37 +0.7
5,418,789 - AO356_24165 0.37 -1.0
5,418,867 + AO356_24165 0.42 +1.2
5,418,867 + AO356_24165 0.42 -1.8
5,418,867 + AO356_24165 0.42 +1.3
5,418,868 - AO356_24165 0.42 +0.3
5,418,868 - AO356_24165 0.42 +1.1
5,418,868 - AO356_24165 0.42 +0.2
5,418,868 - AO356_24165 0.42 +0.6
5,418,868 - AO356_24165 0.42 -0.7
5,418,869 + AO356_24165 0.42 +0.2
5,418,869 + AO356_24165 0.42 -0.0
5,418,870 - AO356_24165 0.42 -0.8
5,418,870 - AO356_24165 0.42 -0.1
5,418,870 - AO356_24165 0.42 +0.3
5,418,870 - AO356_24165 0.42 -0.1
5,418,870 - AO356_24165 0.42 -0.5
5,418,870 - AO356_24165 0.42 +2.3
5,418,873 + AO356_24165 0.42 -0.1
5,418,873 + AO356_24165 0.42 +0.3
5,418,873 + AO356_24165 0.42 +0.3
5,418,873 + AO356_24165 0.42 -0.1
5,418,873 + AO356_24165 0.42 +1.3
5,418,874 - AO356_24165 0.42 -0.1
5,418,874 - AO356_24165 0.42 +0.1
5,418,874 - AO356_24165 0.42 +0.7
5,418,874 - AO356_24165 0.42 -0.5
5,418,874 - AO356_24165 0.42 +0.7
5,418,906 - AO356_24165 0.44 -0.5
5,419,014 + AO356_24165 0.51 -0.5
5,419,014 + AO356_24165 0.51 +0.7
5,419,014 + AO356_24165 0.51 +0.2
5,419,014 + AO356_24165 0.51 -0.3
5,419,014 + AO356_24165 0.51 +1.2
5,419,014 + AO356_24165 0.51 +0.3
5,419,014 + AO356_24165 0.51 +0.7
5,419,014 + AO356_24165 0.51 -0.6
5,419,015 - AO356_24165 0.51 +0.4
5,419,015 - AO356_24165 0.51 +0.8
5,419,015 - AO356_24165 0.51 -0.4
5,419,015 - AO356_24165 0.51 +0.8
5,419,016 + AO356_24165 0.51 -0.2
5,419,016 + AO356_24165 0.51 +0.4
5,419,017 - AO356_24165 0.51 +0.7
5,419,017 - AO356_24165 0.51 +0.3
5,419,017 - AO356_24165 0.51 +0.2
5,419,017 - AO356_24165 0.51 -0.1
5,419,134 - AO356_24165 0.59 -0.2
5,419,134 - AO356_24165 0.59 +0.4
5,419,188 + AO356_24165 0.62 -0.3
5,419,311 + AO356_24165 0.70 +0.2
5,419,669 - -0.5
5,419,777 + +0.3
5,420,105 + AO356_24170 0.12 +0.1
5,420,105 + AO356_24170 0.12 +0.9
5,420,105 + AO356_24170 0.12 +0.4
5,420,105 + AO356_24170 0.12 -1.5
5,420,106 - AO356_24170 0.12 +0.4
5,420,106 - AO356_24170 0.12 +0.8
5,420,205 - AO356_24170 0.15 +0.3
5,420,210 + AO356_24170 0.15 +0.8
5,420,210 + AO356_24170 0.15 +0.7
5,420,267 + AO356_24170 0.17 +0.1
5,420,433 + AO356_24170 0.23 +2.0
5,420,433 + AO356_24170 0.23 -0.1
5,420,520 - AO356_24170 0.26 +0.4
5,420,738 + AO356_24170 0.34 +0.1
5,420,774 + AO356_24170 0.35 +0.2
5,420,832 - AO356_24170 0.37 -0.9
5,420,832 - AO356_24170 0.37 +0.3
5,421,322 - AO356_24170 0.54 +2.0
5,421,356 + AO356_24170 0.55 -0.1
5,421,357 - AO356_24170 0.55 +1.0
5,421,383 + AO356_24170 0.56 +0.6
5,421,383 + AO356_24170 0.56 +0.2
5,421,384 - AO356_24170 0.56 -0.2
5,421,384 - AO356_24170 0.56 -0.6
5,421,384 - AO356_24170 0.56 +0.1
5,421,384 - AO356_24170 0.56 -0.3
5,421,386 + AO356_24170 0.56 +0.4
5,421,696 - AO356_24170 0.67 -0.8
5,421,696 - AO356_24170 0.67 +0.5
5,421,696 - AO356_24170 0.67 +0.5
5,421,866 - AO356_24170 0.73 -0.6
5,421,866 - AO356_24170 0.73 -0.5
5,421,883 + AO356_24170 0.73 -0.8
5,421,968 + AO356_24170 0.76 +1.0
5,421,980 + AO356_24170 0.77 -0.3
5,421,981 - AO356_24170 0.77 +0.1
5,421,981 - AO356_24170 0.77 -0.5
5,421,981 - AO356_24170 0.77 +0.0
5,421,981 - AO356_24170 0.77 -0.1
5,422,047 - AO356_24170 0.79 +0.7
5,422,047 - AO356_24170 0.79 -0.5
5,422,241 + AO356_24170 0.86 +0.1
5,422,241 + AO356_24170 0.86 -0.2
5,422,242 - AO356_24170 0.86 -1.2
5,422,242 - AO356_24170 0.86 -0.7
5,422,386 + -0.2
5,422,430 + +0.7
5,422,430 + -1.6
5,422,431 - -1.0
5,422,511 + -0.2
5,422,511 + +0.1
5,422,512 - +0.5
5,422,512 - +0.2
5,422,512 - +0.4
5,422,537 - -0.3
5,422,690 + AO356_24175 0.20 +0.2
5,422,690 + AO356_24175 0.20 -0.5
5,422,690 + AO356_24175 0.20 +0.1
5,422,735 + AO356_24175 0.41 +0.8
5,422,735 + AO356_24175 0.41 +0.7
5,422,736 - AO356_24175 0.41 +0.3
5,422,736 - AO356_24175 0.41 +0.6
5,422,736 - AO356_24175 0.41 -0.2
5,422,864 + +0.7
5,422,947 - -0.1
5,422,947 - -1.2
5,422,957 + +0.4
5,422,957 + -0.1
5,422,957 + -1.3
5,422,978 + +0.1
5,422,978 + -0.6
5,422,979 - +0.0
5,422,979 - +0.5
5,423,048 - AO356_24180 0.17 +0.7
5,423,090 + AO356_24180 0.25 +0.1
5,423,090 + AO356_24180 0.25 -0.5
5,423,091 - AO356_24180 0.25 +0.3
5,423,091 - AO356_24180 0.25 +1.1
5,423,092 + AO356_24180 0.26 -0.4
5,423,092 + AO356_24180 0.26 -0.4
5,423,092 + AO356_24180 0.26 +0.4
5,423,092 + AO356_24180 0.26 -0.4
5,423,092 + AO356_24180 0.26 -2.1
5,423,092 + AO356_24180 0.26 -0.5
5,423,093 - AO356_24180 0.26 +0.4
5,423,093 - AO356_24180 0.26 +0.7
5,423,140 + AO356_24180 0.35 +0.4
5,423,197 + AO356_24180 0.45 +0.3
5,423,197 + AO356_24180 0.45 +0.3
5,423,198 - AO356_24180 0.46 -0.1
5,423,198 - AO356_24180 0.46 -1.5
5,423,307 + AO356_24180 0.66 -0.5
5,423,307 + AO356_24180 0.66 -0.8
5,423,579 + +0.8
5,423,580 - -0.4
5,423,594 + +0.8
5,423,594 + -0.7
5,423,595 - +0.7

Or see this region's nucleotide sequence