Experiment: Rifampicin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_23855 and AO356_23860 are separated by 95 nucleotides AO356_23860 and AO356_23865 are separated by 13 nucleotides AO356_23865 and AO356_23870 are separated by 2 nucleotides
AO356_23855: AO356_23855 - pyridine nucleotide-disulfide oxidoreductase, at 5,349,673 to 5,350,764
_23855
AO356_23860: AO356_23860 - hypothetical protein, at 5,350,860 to 5,351,048
_23860
AO356_23865: AO356_23865 - hypothetical protein, at 5,351,062 to 5,351,481
_23865
AO356_23870: AO356_23870 - YeeE/YedE, at 5,351,484 to 5,351,918
_23870
Position (kb) 5350
5351
5352 Strain fitness (log2 ratio) -1
0
1 at 5349.892 kb on + strand, within AO356_23855 at 5350.246 kb on + strand, within AO356_23855 at 5350.247 kb on - strand, within AO356_23855 at 5350.289 kb on + strand, within AO356_23855 at 5350.289 kb on + strand, within AO356_23855 at 5350.289 kb on + strand, within AO356_23855 at 5350.290 kb on - strand, within AO356_23855 at 5350.349 kb on + strand, within AO356_23855 at 5350.349 kb on + strand, within AO356_23855 at 5350.350 kb on - strand, within AO356_23855 at 5350.350 kb on - strand, within AO356_23855 at 5350.350 kb on - strand, within AO356_23855 at 5350.417 kb on + strand, within AO356_23855 at 5350.496 kb on + strand, within AO356_23855 at 5350.508 kb on + strand, within AO356_23855 at 5350.677 kb on + strand at 5350.678 kb on - strand at 5350.678 kb on - strand at 5350.692 kb on - strand at 5350.692 kb on - strand at 5350.732 kb on + strand at 5350.732 kb on + strand at 5350.732 kb on + strand at 5350.732 kb on + strand at 5350.733 kb on - strand at 5350.733 kb on - strand at 5350.733 kb on - strand at 5350.733 kb on - strand at 5350.733 kb on - strand at 5350.733 kb on - strand at 5350.897 kb on + strand, within AO356_23860 at 5350.986 kb on + strand, within AO356_23860 at 5350.986 kb on + strand, within AO356_23860 at 5350.987 kb on - strand, within AO356_23860 at 5350.988 kb on + strand, within AO356_23860 at 5350.988 kb on + strand, within AO356_23860 at 5350.989 kb on - strand, within AO356_23860 at 5351.398 kb on + strand, within AO356_23865 at 5351.398 kb on + strand, within AO356_23865 at 5351.398 kb on + strand, within AO356_23865 at 5351.398 kb on + strand, within AO356_23865 at 5351.399 kb on - strand, within AO356_23865 at 5351.514 kb on + strand at 5351.515 kb on - strand at 5351.867 kb on + strand, within AO356_23870 at 5351.895 kb on - strand at 5351.947 kb on - strand at 5351.977 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0016 mg/ml remove 5,349,892 + AO356_23855 0.20 -1.1 5,350,246 + AO356_23855 0.52 -0.3 5,350,247 - AO356_23855 0.53 -0.5 5,350,289 + AO356_23855 0.56 +0.4 5,350,289 + AO356_23855 0.56 -0.2 5,350,289 + AO356_23855 0.56 +0.4 5,350,290 - AO356_23855 0.57 -1.1 5,350,349 + AO356_23855 0.62 +0.9 5,350,349 + AO356_23855 0.62 -0.0 5,350,350 - AO356_23855 0.62 +0.1 5,350,350 - AO356_23855 0.62 -0.0 5,350,350 - AO356_23855 0.62 +0.0 5,350,417 + AO356_23855 0.68 +0.4 5,350,496 + AO356_23855 0.75 -0.2 5,350,508 + AO356_23855 0.76 +0.3 5,350,677 + +0.7 5,350,678 - -0.5 5,350,678 - +0.4 5,350,692 - +0.7 5,350,692 - -0.2 5,350,732 + +1.0 5,350,732 + -0.2 5,350,732 + -0.6 5,350,732 + +0.3 5,350,733 - -1.0 5,350,733 - +0.5 5,350,733 - +0.3 5,350,733 - +0.1 5,350,733 - +1.7 5,350,733 - -0.1 5,350,897 + AO356_23860 0.20 -0.3 5,350,986 + AO356_23860 0.67 -1.5 5,350,986 + AO356_23860 0.67 -0.5 5,350,987 - AO356_23860 0.67 -0.6 5,350,988 + AO356_23860 0.68 +0.8 5,350,988 + AO356_23860 0.68 -1.4 5,350,989 - AO356_23860 0.68 -0.6 5,351,398 + AO356_23865 0.80 +0.1 5,351,398 + AO356_23865 0.80 +0.1 5,351,398 + AO356_23865 0.80 -0.8 5,351,398 + AO356_23865 0.80 -0.5 5,351,399 - AO356_23865 0.80 +0.2 5,351,514 + +0.7 5,351,515 - -0.5 5,351,867 + AO356_23870 0.88 +0.4 5,351,895 - -0.2 5,351,947 - -0.0 5,351,977 + +0.7
Or see this region's nucleotide sequence