Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_23445

Experiment: Rifampicin 0.0016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_23435 and AO356_23440 overlap by 8 nucleotidesAO356_23440 and AO356_23445 are separated by 245 nucleotidesAO356_23445 and AO356_23450 are separated by 70 nucleotidesAO356_23450 and AO356_23455 are separated by 4 nucleotides AO356_23435: AO356_23435 - hypothetical protein, at 5,254,901 to 5,255,380 _23435 AO356_23440: AO356_23440 - calpastatin, at 5,255,373 to 5,255,801 _23440 AO356_23445: AO356_23445 - hypothetical protein, at 5,256,047 to 5,256,829 _23445 AO356_23450: AO356_23450 - LuxR family transcriptional regulator, at 5,256,900 to 5,257,481 _23450 AO356_23455: AO356_23455 - diguanylate cyclase, at 5,257,486 to 5,259,132 _23455 Position (kb) 5256 5257Strain fitness (log2 ratio) -2 -1 0 1 2at 5255.078 kb on + strand, within AO356_23435at 5255.078 kb on + strand, within AO356_23435at 5255.097 kb on + strand, within AO356_23435at 5255.310 kb on + strand, within AO356_23435at 5255.311 kb on - strand, within AO356_23435at 5255.370 kb on + strandat 5255.374 kb on + strandat 5255.374 kb on + strandat 5255.374 kb on + strandat 5255.375 kb on - strandat 5255.375 kb on - strandat 5255.399 kb on + strandat 5255.399 kb on + strandat 5255.400 kb on - strandat 5255.400 kb on - strandat 5255.400 kb on - strandat 5255.403 kb on + strandat 5255.403 kb on + strandat 5255.404 kb on - strandat 5255.404 kb on - strandat 5255.456 kb on - strand, within AO356_23440at 5255.456 kb on - strand, within AO356_23440at 5255.647 kb on + strand, within AO356_23440at 5255.650 kb on + strand, within AO356_23440at 5255.650 kb on + strand, within AO356_23440at 5255.650 kb on + strand, within AO356_23440at 5255.650 kb on + strand, within AO356_23440at 5255.651 kb on - strand, within AO356_23440at 5255.651 kb on - strand, within AO356_23440at 5255.651 kb on - strand, within AO356_23440at 5255.682 kb on + strand, within AO356_23440at 5255.682 kb on + strand, within AO356_23440at 5255.733 kb on + strand, within AO356_23440at 5255.755 kb on + strand, within AO356_23440at 5255.755 kb on + strand, within AO356_23440at 5255.755 kb on + strand, within AO356_23440at 5255.756 kb on - strand, within AO356_23440at 5255.801 kb on + strandat 5255.801 kb on + strandat 5255.801 kb on + strandat 5255.801 kb on + strandat 5255.802 kb on - strandat 5255.900 kb on - strandat 5255.940 kb on + strandat 5255.940 kb on + strandat 5255.941 kb on - strandat 5255.941 kb on - strandat 5255.941 kb on - strandat 5255.942 kb on + strandat 5255.942 kb on + strandat 5255.942 kb on + strandat 5255.943 kb on - strandat 5255.957 kb on - strandat 5255.959 kb on - strandat 5255.986 kb on + strandat 5255.986 kb on + strandat 5255.986 kb on + strandat 5255.986 kb on + strandat 5255.986 kb on + strandat 5255.987 kb on - strandat 5256.025 kb on + strandat 5256.026 kb on - strandat 5256.423 kb on - strand, within AO356_23445at 5256.467 kb on + strand, within AO356_23445at 5256.468 kb on - strand, within AO356_23445at 5256.468 kb on - strand, within AO356_23445at 5256.468 kb on - strand, within AO356_23445at 5256.527 kb on + strand, within AO356_23445at 5256.590 kb on + strand, within AO356_23445at 5256.590 kb on + strand, within AO356_23445at 5256.634 kb on + strand, within AO356_23445at 5256.635 kb on - strand, within AO356_23445at 5256.735 kb on - strand, within AO356_23445at 5256.816 kb on - strandat 5256.925 kb on + strandat 5256.926 kb on - strandat 5256.967 kb on + strand, within AO356_23450at 5256.967 kb on + strand, within AO356_23450at 5256.968 kb on - strand, within AO356_23450at 5257.018 kb on + strand, within AO356_23450at 5257.018 kb on + strand, within AO356_23450at 5257.018 kb on + strand, within AO356_23450at 5257.019 kb on - strand, within AO356_23450at 5257.233 kb on + strand, within AO356_23450at 5257.233 kb on + strand, within AO356_23450at 5257.274 kb on + strand, within AO356_23450at 5257.274 kb on + strand, within AO356_23450at 5257.274 kb on + strand, within AO356_23450at 5257.274 kb on + strand, within AO356_23450at 5257.275 kb on - strand, within AO356_23450at 5257.275 kb on - strand, within AO356_23450at 5257.275 kb on - strand, within AO356_23450at 5257.503 kb on + strandat 5257.606 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.0016 mg/ml
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5,255,078 + AO356_23435 0.37 +1.1
5,255,078 + AO356_23435 0.37 -0.2
5,255,097 + AO356_23435 0.41 +0.7
5,255,310 + AO356_23435 0.85 +0.8
5,255,311 - AO356_23435 0.85 +0.6
5,255,370 + -0.7
5,255,374 + -0.1
5,255,374 + +0.2
5,255,374 + -0.1
5,255,375 - +0.4
5,255,375 - +0.5
5,255,399 + +2.0
5,255,399 + +0.2
5,255,400 - +1.3
5,255,400 - -1.5
5,255,400 - +1.5
5,255,403 + -0.4
5,255,403 + -1.8
5,255,404 - +0.7
5,255,404 - -0.5
5,255,456 - AO356_23440 0.19 -0.3
5,255,456 - AO356_23440 0.19 +1.0
5,255,647 + AO356_23440 0.64 -1.0
5,255,650 + AO356_23440 0.65 -0.4
5,255,650 + AO356_23440 0.65 +0.4
5,255,650 + AO356_23440 0.65 +0.5
5,255,650 + AO356_23440 0.65 -0.1
5,255,651 - AO356_23440 0.65 +0.9
5,255,651 - AO356_23440 0.65 -0.2
5,255,651 - AO356_23440 0.65 -0.2
5,255,682 + AO356_23440 0.72 +0.5
5,255,682 + AO356_23440 0.72 +0.0
5,255,733 + AO356_23440 0.84 +0.7
5,255,755 + AO356_23440 0.89 -0.2
5,255,755 + AO356_23440 0.89 +1.0
5,255,755 + AO356_23440 0.89 -0.3
5,255,756 - AO356_23440 0.89 -0.9
5,255,801 + -0.5
5,255,801 + +0.6
5,255,801 + +0.3
5,255,801 + -0.6
5,255,802 - +0.5
5,255,900 - +0.6
5,255,940 + +0.2
5,255,940 + +0.1
5,255,941 - -1.0
5,255,941 - -0.8
5,255,941 - -0.7
5,255,942 + +1.2
5,255,942 + -0.0
5,255,942 + -1.4
5,255,943 - +1.1
5,255,957 - +0.7
5,255,959 - -0.4
5,255,986 + -0.3
5,255,986 + -0.8
5,255,986 + +0.9
5,255,986 + +0.4
5,255,986 + -0.4
5,255,987 - +0.2
5,256,025 + -0.1
5,256,026 - +0.2
5,256,423 - AO356_23445 0.48 -0.4
5,256,467 + AO356_23445 0.54 -1.7
5,256,468 - AO356_23445 0.54 -0.6
5,256,468 - AO356_23445 0.54 -1.1
5,256,468 - AO356_23445 0.54 -0.1
5,256,527 + AO356_23445 0.61 +0.3
5,256,590 + AO356_23445 0.69 +0.1
5,256,590 + AO356_23445 0.69 -0.0
5,256,634 + AO356_23445 0.75 -0.3
5,256,635 - AO356_23445 0.75 +0.3
5,256,735 - AO356_23445 0.88 +0.4
5,256,816 - -2.1
5,256,925 + +0.6
5,256,926 - +2.3
5,256,967 + AO356_23450 0.12 -0.3
5,256,967 + AO356_23450 0.12 -0.8
5,256,968 - AO356_23450 0.12 -0.9
5,257,018 + AO356_23450 0.20 +0.6
5,257,018 + AO356_23450 0.20 +0.9
5,257,018 + AO356_23450 0.20 -0.2
5,257,019 - AO356_23450 0.20 -0.4
5,257,233 + AO356_23450 0.57 +0.2
5,257,233 + AO356_23450 0.57 -0.1
5,257,274 + AO356_23450 0.64 -0.3
5,257,274 + AO356_23450 0.64 -0.5
5,257,274 + AO356_23450 0.64 +0.1
5,257,274 + AO356_23450 0.64 -0.5
5,257,275 - AO356_23450 0.64 +0.3
5,257,275 - AO356_23450 0.64 -0.4
5,257,275 - AO356_23450 0.64 +1.4
5,257,503 + -0.1
5,257,606 - -0.8

Or see this region's nucleotide sequence