Experiment: Rifampicin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_20780 and AO356_20785 are separated by 156 nucleotides AO356_20785 and AO356_20790 are separated by 352 nucleotides
AO356_20780: AO356_20780 - diguanylate cyclase, at 4,630,595 to 4,632,784
_20780
AO356_20785: AO356_20785 - hypothetical protein, at 4,632,941 to 4,633,126
_20785
AO356_20790: AO356_20790 - hypothetical protein, at 4,633,479 to 4,633,895
_20790
Position (kb)
4632
4633
4634 Strain fitness (log2 ratio)
-1
0
1
2 at 4631.987 kb on + strand, within AO356_20780 at 4631.987 kb on + strand, within AO356_20780 at 4631.987 kb on + strand, within AO356_20780 at 4631.987 kb on + strand, within AO356_20780 at 4631.988 kb on - strand, within AO356_20780 at 4631.988 kb on - strand, within AO356_20780 at 4631.988 kb on - strand, within AO356_20780 at 4631.988 kb on - strand, within AO356_20780 at 4632.344 kb on + strand, within AO356_20780 at 4632.345 kb on - strand, within AO356_20780 at 4632.728 kb on + strand at 4632.913 kb on + strand at 4632.954 kb on - strand at 4632.954 kb on - strand at 4633.016 kb on + strand, within AO356_20785 at 4633.017 kb on - strand, within AO356_20785 at 4633.183 kb on - strand at 4633.234 kb on + strand at 4633.239 kb on - strand at 4633.247 kb on + strand at 4633.293 kb on + strand at 4633.293 kb on + strand at 4633.293 kb on + strand at 4633.294 kb on - strand at 4633.294 kb on - strand at 4633.294 kb on - strand at 4633.294 kb on - strand at 4633.297 kb on + strand at 4633.297 kb on + strand at 4633.297 kb on + strand at 4633.297 kb on + strand at 4633.297 kb on + strand at 4633.298 kb on - strand at 4633.298 kb on - strand at 4633.325 kb on + strand at 4633.326 kb on - strand at 4633.326 kb on - strand at 4633.365 kb on + strand at 4633.366 kb on - strand at 4633.370 kb on + strand at 4633.417 kb on + strand at 4633.475 kb on + strand at 4633.475 kb on + strand at 4633.476 kb on - strand at 4633.504 kb on + strand at 4633.869 kb on + strand at 4633.869 kb on + strand at 4633.870 kb on - strand at 4633.870 kb on - strand at 4634.017 kb on + strand at 4634.017 kb on + strand at 4634.017 kb on + strand at 4634.017 kb on + strand at 4634.017 kb on + strand at 4634.018 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0016 mg/ml remove 4,631,987 + AO356_20780 0.64 -0.4 4,631,987 + AO356_20780 0.64 -0.1 4,631,987 + AO356_20780 0.64 +0.7 4,631,987 + AO356_20780 0.64 -0.6 4,631,988 - AO356_20780 0.64 -0.9 4,631,988 - AO356_20780 0.64 -0.2 4,631,988 - AO356_20780 0.64 -0.0 4,631,988 - AO356_20780 0.64 +0.9 4,632,344 + AO356_20780 0.80 +1.7 4,632,345 - AO356_20780 0.80 +0.6 4,632,728 + +0.9 4,632,913 + -0.1 4,632,954 - +1.4 4,632,954 - -0.2 4,633,016 + AO356_20785 0.40 -0.4 4,633,017 - AO356_20785 0.41 -0.1 4,633,183 - +0.1 4,633,234 + +0.0 4,633,239 - +0.3 4,633,247 + +0.5 4,633,293 + +0.6 4,633,293 + +0.5 4,633,293 + -0.2 4,633,294 - -0.1 4,633,294 - -0.0 4,633,294 - +0.9 4,633,294 - -0.0 4,633,297 + -0.9 4,633,297 + +0.7 4,633,297 + +1.1 4,633,297 + +0.5 4,633,297 + -1.0 4,633,298 - -0.4 4,633,298 - +0.3 4,633,325 + -0.8 4,633,326 - -0.0 4,633,326 - +0.7 4,633,365 + -0.1 4,633,366 - +1.8 4,633,370 + +0.1 4,633,417 + -0.7 4,633,475 + -0.1 4,633,475 + -1.0 4,633,476 - +0.7 4,633,504 + +0.5 4,633,869 + +0.6 4,633,869 + -0.2 4,633,870 - +0.4 4,633,870 - +0.3 4,634,017 + -0.3 4,634,017 + +0.4 4,634,017 + -0.7 4,634,017 + -0.4 4,634,017 + +0.3 4,634,018 - +0.4
Or see this region's nucleotide sequence