Experiment: Rifampicin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_17500 and AO356_17505 are separated by 171 nucleotides AO356_17505 and AO356_17510 are separated by 49 nucleotides AO356_17510 and AO356_17515 are separated by 166 nucleotides
AO356_17500: AO356_17500 - GTPase Era, at 3,941,177 to 3,942,079
_17500
AO356_17505: AO356_17505 - DNA repair protein RecO, at 3,942,251 to 3,942,940
_17505
AO356_17510: AO356_17510 - pyridoxine 5'-phosphate synthase, at 3,942,990 to 3,943,733
_17510
AO356_17515: AO356_17515 - murein transglycosylase, at 3,943,900 to 3,945,294
_17515
Position (kb)
3942
3943 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3942.095 kb on + strand at 3942.095 kb on + strand at 3942.095 kb on + strand at 3942.096 kb on - strand at 3942.096 kb on - strand at 3942.096 kb on - strand at 3942.285 kb on - strand at 3942.285 kb on - strand at 3942.285 kb on - strand at 3942.522 kb on - strand, within AO356_17505 at 3942.522 kb on - strand, within AO356_17505 at 3942.522 kb on - strand, within AO356_17505 at 3942.522 kb on - strand, within AO356_17505 at 3942.522 kb on - strand, within AO356_17505 at 3942.588 kb on - strand, within AO356_17505 at 3942.677 kb on + strand, within AO356_17505 at 3942.677 kb on + strand, within AO356_17505 at 3942.770 kb on + strand, within AO356_17505 at 3942.770 kb on + strand, within AO356_17505 at 3942.770 kb on + strand, within AO356_17505 at 3942.949 kb on + strand at 3942.949 kb on + strand at 3942.949 kb on + strand at 3942.949 kb on + strand at 3942.949 kb on + strand at 3942.950 kb on - strand at 3942.965 kb on + strand at 3943.855 kb on + strand at 3943.855 kb on + strand at 3943.856 kb on - strand at 3943.856 kb on - strand at 3943.881 kb on + strand at 3943.881 kb on + strand at 3943.881 kb on + strand at 3943.882 kb on - strand at 3943.882 kb on - strand at 3943.892 kb on + strand at 3943.892 kb on + strand at 3943.892 kb on + strand at 3943.892 kb on + strand at 3943.893 kb on - strand at 3943.893 kb on - strand at 3943.893 kb on - strand at 3943.893 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0016 mg/ml remove 3,942,095 + -0.9 3,942,095 + +0.2 3,942,095 + +0.9 3,942,096 - +1.1 3,942,096 - -1.6 3,942,096 - -1.4 3,942,285 - +0.4 3,942,285 - +0.5 3,942,285 - -0.7 3,942,522 - AO356_17505 0.39 -0.2 3,942,522 - AO356_17505 0.39 -2.8 3,942,522 - AO356_17505 0.39 -1.3 3,942,522 - AO356_17505 0.39 +0.3 3,942,522 - AO356_17505 0.39 -0.3 3,942,588 - AO356_17505 0.49 -0.8 3,942,677 + AO356_17505 0.62 -1.2 3,942,677 + AO356_17505 0.62 +0.1 3,942,770 + AO356_17505 0.75 -1.7 3,942,770 + AO356_17505 0.75 -2.0 3,942,770 + AO356_17505 0.75 +0.1 3,942,949 + -0.2 3,942,949 + +0.3 3,942,949 + +0.2 3,942,949 + -0.4 3,942,949 + -0.3 3,942,950 - -0.2 3,942,965 + +0.1 3,943,855 + +0.7 3,943,855 + -0.4 3,943,856 - -0.4 3,943,856 - -0.2 3,943,881 + +0.4 3,943,881 + +0.4 3,943,881 + -0.3 3,943,882 - -0.0 3,943,882 - +0.3 3,943,892 + -1.2 3,943,892 + -0.7 3,943,892 + +0.2 3,943,892 + -0.2 3,943,893 - -0.1 3,943,893 - +1.2 3,943,893 - -0.6 3,943,893 - -0.3
Or see this region's nucleotide sequence