Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_17505

Experiment: Rifampicin 0.0016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_17500 and AO356_17505 are separated by 171 nucleotidesAO356_17505 and AO356_17510 are separated by 49 nucleotidesAO356_17510 and AO356_17515 are separated by 166 nucleotides AO356_17500: AO356_17500 - GTPase Era, at 3,941,177 to 3,942,079 _17500 AO356_17505: AO356_17505 - DNA repair protein RecO, at 3,942,251 to 3,942,940 _17505 AO356_17510: AO356_17510 - pyridoxine 5'-phosphate synthase, at 3,942,990 to 3,943,733 _17510 AO356_17515: AO356_17515 - murein transglycosylase, at 3,943,900 to 3,945,294 _17515 Position (kb) 3942 3943Strain fitness (log2 ratio) -3 -2 -1 0 1at 3942.095 kb on + strandat 3942.095 kb on + strandat 3942.095 kb on + strandat 3942.096 kb on - strandat 3942.096 kb on - strandat 3942.096 kb on - strandat 3942.285 kb on - strandat 3942.285 kb on - strandat 3942.285 kb on - strandat 3942.522 kb on - strand, within AO356_17505at 3942.522 kb on - strand, within AO356_17505at 3942.522 kb on - strand, within AO356_17505at 3942.522 kb on - strand, within AO356_17505at 3942.522 kb on - strand, within AO356_17505at 3942.588 kb on - strand, within AO356_17505at 3942.677 kb on + strand, within AO356_17505at 3942.677 kb on + strand, within AO356_17505at 3942.770 kb on + strand, within AO356_17505at 3942.770 kb on + strand, within AO356_17505at 3942.770 kb on + strand, within AO356_17505at 3942.949 kb on + strandat 3942.949 kb on + strandat 3942.949 kb on + strandat 3942.949 kb on + strandat 3942.949 kb on + strandat 3942.950 kb on - strandat 3942.965 kb on + strandat 3943.855 kb on + strandat 3943.855 kb on + strandat 3943.856 kb on - strandat 3943.856 kb on - strandat 3943.881 kb on + strandat 3943.881 kb on + strandat 3943.881 kb on + strandat 3943.882 kb on - strandat 3943.882 kb on - strandat 3943.892 kb on + strandat 3943.892 kb on + strandat 3943.892 kb on + strandat 3943.892 kb on + strandat 3943.893 kb on - strandat 3943.893 kb on - strandat 3943.893 kb on - strandat 3943.893 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.0016 mg/ml
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3,942,095 + -0.9
3,942,095 + +0.2
3,942,095 + +0.9
3,942,096 - +1.1
3,942,096 - -1.6
3,942,096 - -1.4
3,942,285 - +0.4
3,942,285 - +0.5
3,942,285 - -0.7
3,942,522 - AO356_17505 0.39 -0.2
3,942,522 - AO356_17505 0.39 -2.8
3,942,522 - AO356_17505 0.39 -1.3
3,942,522 - AO356_17505 0.39 +0.3
3,942,522 - AO356_17505 0.39 -0.3
3,942,588 - AO356_17505 0.49 -0.8
3,942,677 + AO356_17505 0.62 -1.2
3,942,677 + AO356_17505 0.62 +0.1
3,942,770 + AO356_17505 0.75 -1.7
3,942,770 + AO356_17505 0.75 -2.0
3,942,770 + AO356_17505 0.75 +0.1
3,942,949 + -0.2
3,942,949 + +0.3
3,942,949 + +0.2
3,942,949 + -0.4
3,942,949 + -0.3
3,942,950 - -0.2
3,942,965 + +0.1
3,943,855 + +0.7
3,943,855 + -0.4
3,943,856 - -0.4
3,943,856 - -0.2
3,943,881 + +0.4
3,943,881 + +0.4
3,943,881 + -0.3
3,943,882 - -0.0
3,943,882 - +0.3
3,943,892 + -1.2
3,943,892 + -0.7
3,943,892 + +0.2
3,943,892 + -0.2
3,943,893 - -0.1
3,943,893 - +1.2
3,943,893 - -0.6
3,943,893 - -0.3

Or see this region's nucleotide sequence