Experiment: Rifampicin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_17060 and AO356_17065 are separated by 256 nucleotides AO356_17065 and AO356_17070 overlap by 1 nucleotides AO356_17070 and AO356_17075 overlap by 1 nucleotides AO356_17075 and AO356_17080 are separated by 151 nucleotides
AO356_17060: AO356_17060 - 30S ribosomal protein S9, at 3,841,954 to 3,842,346
_17060
AO356_17065: AO356_17065 - ubiquinol-cytochrome c reductase iron-sulfur subunit, at 3,842,603 to 3,843,196
_17065
AO356_17070: AO356_17070 - cytochrome B, at 3,843,196 to 3,844,407
_17070
AO356_17075: AO356_17075 - cytochrome C, at 3,844,407 to 3,845,189
_17075
AO356_17080: AO356_17080 - stringent starvation protein A, at 3,845,341 to 3,845,958
_17080
Position (kb)
3843
3844
3845 Strain fitness (log2 ratio)
-2
-1
0
1 at 3842.452 kb on - strand at 3842.456 kb on + strand at 3842.457 kb on - strand at 3842.457 kb on - strand at 3842.457 kb on - strand at 3842.457 kb on - strand at 3842.457 kb on - strand at 3842.484 kb on + strand at 3842.484 kb on + strand at 3842.484 kb on + strand at 3842.488 kb on + strand at 3842.488 kb on + strand at 3842.488 kb on + strand at 3842.488 kb on + strand at 3842.488 kb on + strand at 3842.488 kb on + strand at 3842.489 kb on - strand at 3842.489 kb on - strand at 3842.489 kb on - strand at 3842.489 kb on - strand at 3842.489 kb on - strand at 3842.536 kb on + strand at 3842.550 kb on + strand at 3842.554 kb on + strand at 3842.557 kb on + strand at 3842.570 kb on + strand at 3842.570 kb on + strand at 3842.903 kb on - strand, within AO356_17065 at 3842.916 kb on - strand, within AO356_17065 at 3842.916 kb on - strand, within AO356_17065 at 3842.916 kb on - strand, within AO356_17065 at 3843.409 kb on + strand, within AO356_17070 at 3843.409 kb on + strand, within AO356_17070 at 3843.490 kb on + strand, within AO356_17070 at 3843.491 kb on - strand, within AO356_17070 at 3843.732 kb on + strand, within AO356_17070 at 3844.202 kb on - strand, within AO356_17070 at 3844.327 kb on + strand at 3844.358 kb on - strand at 3844.442 kb on + strand at 3844.541 kb on + strand, within AO356_17075 at 3844.554 kb on + strand, within AO356_17075 at 3844.555 kb on - strand, within AO356_17075 at 3844.776 kb on + strand, within AO356_17075 at 3844.776 kb on + strand, within AO356_17075 at 3844.895 kb on - strand, within AO356_17075 at 3844.993 kb on + strand, within AO356_17075 at 3845.112 kb on + strand at 3845.112 kb on + strand at 3845.112 kb on + strand at 3845.112 kb on + strand at 3845.112 kb on + strand at 3845.113 kb on - strand at 3845.113 kb on - strand at 3845.116 kb on + strand at 3845.116 kb on + strand at 3845.116 kb on + strand at 3845.116 kb on + strand at 3845.117 kb on - strand at 3845.117 kb on - strand at 3845.117 kb on - strand at 3845.117 kb on - strand at 3845.143 kb on + strand at 3845.151 kb on + strand at 3845.190 kb on + strand at 3845.191 kb on - strand at 3845.191 kb on - strand at 3845.198 kb on + strand at 3845.198 kb on + strand at 3845.199 kb on - strand at 3845.199 kb on - strand at 3845.238 kb on + strand at 3845.238 kb on + strand at 3845.238 kb on + strand at 3845.239 kb on - strand at 3845.239 kb on - strand at 3845.246 kb on + strand at 3845.246 kb on + strand at 3845.246 kb on + strand at 3845.246 kb on + strand at 3845.246 kb on + strand at 3845.246 kb on + strand at 3845.246 kb on + strand at 3845.246 kb on + strand at 3845.247 kb on - strand at 3845.247 kb on - strand at 3845.247 kb on - strand at 3845.247 kb on - strand at 3845.247 kb on - strand at 3845.247 kb on - strand at 3845.247 kb on - strand at 3845.368 kb on + strand at 3845.368 kb on + strand at 3845.390 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0016 mg/ml remove 3,842,452 - -1.8 3,842,456 + +0.8 3,842,457 - +0.4 3,842,457 - -0.5 3,842,457 - -0.1 3,842,457 - +0.1 3,842,457 - -1.3 3,842,484 + -0.2 3,842,484 + +1.0 3,842,484 + -0.0 3,842,488 + +0.0 3,842,488 + -0.3 3,842,488 + +1.0 3,842,488 + -0.6 3,842,488 + -0.1 3,842,488 + +0.7 3,842,489 - -0.3 3,842,489 - -0.2 3,842,489 - -1.5 3,842,489 - -1.6 3,842,489 - +0.1 3,842,536 + +0.3 3,842,550 + +0.6 3,842,554 + +0.1 3,842,557 + -0.5 3,842,570 + -0.3 3,842,570 + +0.2 3,842,903 - AO356_17065 0.51 -1.3 3,842,916 - AO356_17065 0.53 +0.1 3,842,916 - AO356_17065 0.53 -0.5 3,842,916 - AO356_17065 0.53 -0.1 3,843,409 + AO356_17070 0.18 +1.1 3,843,409 + AO356_17070 0.18 -0.9 3,843,490 + AO356_17070 0.24 -0.7 3,843,491 - AO356_17070 0.24 -2.6 3,843,732 + AO356_17070 0.44 -1.1 3,844,202 - AO356_17070 0.83 +1.5 3,844,327 + -0.7 3,844,358 - -1.4 3,844,442 + +0.1 3,844,541 + AO356_17075 0.17 +0.4 3,844,554 + AO356_17075 0.19 +0.6 3,844,555 - AO356_17075 0.19 -0.3 3,844,776 + AO356_17075 0.47 -0.4 3,844,776 + AO356_17075 0.47 -1.1 3,844,895 - AO356_17075 0.62 +0.9 3,844,993 + AO356_17075 0.75 -0.7 3,845,112 + -0.4 3,845,112 + +0.8 3,845,112 + +0.5 3,845,112 + -0.3 3,845,112 + +0.2 3,845,113 - -1.4 3,845,113 - -0.9 3,845,116 + +0.3 3,845,116 + +0.3 3,845,116 + -0.3 3,845,116 + +0.9 3,845,117 - +0.6 3,845,117 - -1.1 3,845,117 - -0.4 3,845,117 - -0.4 3,845,143 + +0.9 3,845,151 + +1.0 3,845,190 + +0.8 3,845,191 - -0.4 3,845,191 - -0.4 3,845,198 + +0.3 3,845,198 + +1.2 3,845,199 - -0.1 3,845,199 - -0.7 3,845,238 + +0.4 3,845,238 + +0.1 3,845,238 + -0.1 3,845,239 - -0.6 3,845,239 - -1.7 3,845,246 + -0.4 3,845,246 + +0.4 3,845,246 + +0.3 3,845,246 + +0.5 3,845,246 + +0.2 3,845,246 + -0.2 3,845,246 + +0.8 3,845,246 + +1.6 3,845,247 - -0.2 3,845,247 - -0.2 3,845,247 - -1.1 3,845,247 - -0.8 3,845,247 - +0.1 3,845,247 - -0.8 3,845,247 - +0.3 3,845,368 + -1.2 3,845,368 + -1.3 3,845,390 - -0.6
Or see this region's nucleotide sequence