Experiment: Rifampicin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_14540 and AO356_14545 overlap by 11 nucleotides AO356_14545 and AO356_14550 are separated by 7 nucleotides AO356_14550 and AO356_14555 are separated by 142 nucleotides AO356_14555 and AO356_14560 are separated by 24 nucleotides AO356_14560 and AO356_14565 are separated by 26 nucleotides AO356_14565 and AO356_14570 are separated by 84 nucleotides
AO356_14540: AO356_14540 - biotin--protein ligase, at 3,304,513 to 3,305,469
_14540
AO356_14545: AO356_14545 - type III pantothenate kinase, at 3,305,459 to 3,306,208
_14545
AO356_14550: AO356_14550 - hypothetical protein, at 3,306,216 to 3,306,671
_14550
AO356_14555: AO356_14555 - tRNA-Tyr, at 3,306,814 to 3,306,898
_14555
AO356_14560: AO356_14560 - tRNA-Gly, at 3,306,923 to 3,306,996
_14560
AO356_14565: AO356_14565 - tRNA-Thr, at 3,307,023 to 3,307,098
_14565
AO356_14570: AO356_14570 - elongation factor Tu, at 3,307,183 to 3,308,376
_14570
Position (kb)
3306
3307 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3306.216 kb on - strand at 3306.216 kb on - strand at 3306.235 kb on + strand at 3306.258 kb on + strand at 3306.258 kb on + strand at 3306.258 kb on + strand at 3306.258 kb on + strand at 3306.259 kb on - strand at 3306.259 kb on - strand at 3306.259 kb on - strand at 3306.259 kb on - strand at 3306.261 kb on + strand at 3306.261 kb on + strand at 3306.261 kb on + strand at 3306.261 kb on + strand at 3306.261 kb on + strand at 3306.261 kb on + strand at 3306.261 kb on + strand at 3306.261 kb on + strand at 3306.261 kb on + strand at 3306.261 kb on + strand at 3306.261 kb on + strand at 3306.261 kb on + strand at 3306.262 kb on - strand, within AO356_14550 at 3306.262 kb on - strand, within AO356_14550 at 3306.262 kb on - strand, within AO356_14550 at 3306.262 kb on - strand, within AO356_14550 at 3306.262 kb on - strand, within AO356_14550 at 3306.262 kb on - strand, within AO356_14550 at 3306.262 kb on - strand, within AO356_14550 at 3306.319 kb on + strand, within AO356_14550 at 3306.319 kb on + strand, within AO356_14550 at 3306.319 kb on + strand, within AO356_14550 at 3306.319 kb on + strand, within AO356_14550 at 3306.319 kb on + strand, within AO356_14550 at 3306.319 kb on + strand, within AO356_14550 at 3306.320 kb on - strand, within AO356_14550 at 3306.320 kb on - strand, within AO356_14550 at 3306.320 kb on - strand, within AO356_14550 at 3306.320 kb on - strand, within AO356_14550 at 3306.320 kb on - strand, within AO356_14550 at 3306.320 kb on - strand, within AO356_14550 at 3306.320 kb on - strand, within AO356_14550 at 3306.320 kb on - strand, within AO356_14550 at 3306.320 kb on - strand, within AO356_14550 at 3306.321 kb on + strand, within AO356_14550 at 3306.322 kb on - strand, within AO356_14550 at 3306.322 kb on - strand, within AO356_14550 at 3306.322 kb on - strand, within AO356_14550 at 3306.342 kb on - strand, within AO356_14550 at 3306.392 kb on + strand, within AO356_14550 at 3306.423 kb on + strand, within AO356_14550 at 3306.423 kb on + strand, within AO356_14550 at 3306.423 kb on + strand, within AO356_14550 at 3306.424 kb on - strand, within AO356_14550 at 3306.493 kb on + strand, within AO356_14550 at 3306.493 kb on + strand, within AO356_14550 at 3306.493 kb on + strand, within AO356_14550 at 3306.494 kb on - strand, within AO356_14550 at 3306.494 kb on - strand, within AO356_14550 at 3306.494 kb on - strand, within AO356_14550 at 3306.494 kb on - strand, within AO356_14550 at 3306.494 kb on - strand, within AO356_14550 at 3306.609 kb on - strand, within AO356_14550 at 3306.632 kb on + strand at 3306.638 kb on - strand at 3306.669 kb on + strand at 3306.669 kb on + strand at 3306.669 kb on + strand at 3306.678 kb on + strand at 3306.678 kb on + strand at 3306.678 kb on + strand at 3306.710 kb on + strand at 3307.099 kb on + strand at 3307.099 kb on + strand at 3307.099 kb on + strand at 3307.099 kb on + strand at 3307.102 kb on + strand at 3307.102 kb on + strand at 3307.102 kb on + strand at 3307.102 kb on + strand at 3307.113 kb on + strand at 3307.136 kb on + strand at 3307.169 kb on + strand at 3307.206 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0016 mg/ml remove 3,306,216 - -2.9 3,306,216 - -0.5 3,306,235 + -0.4 3,306,258 + -2.5 3,306,258 + +0.1 3,306,258 + -0.2 3,306,258 + -1.7 3,306,259 - +0.4 3,306,259 - -1.7 3,306,259 - -0.9 3,306,259 - -0.5 3,306,261 + +0.1 3,306,261 + -0.2 3,306,261 + -1.5 3,306,261 + -0.8 3,306,261 + -1.7 3,306,261 + -0.3 3,306,261 + -0.4 3,306,261 + +0.2 3,306,261 + -0.6 3,306,261 + +0.3 3,306,261 + -0.1 3,306,261 + +0.2 3,306,262 - AO356_14550 0.10 -0.1 3,306,262 - AO356_14550 0.10 +0.3 3,306,262 - AO356_14550 0.10 -0.3 3,306,262 - AO356_14550 0.10 -2.1 3,306,262 - AO356_14550 0.10 +0.2 3,306,262 - AO356_14550 0.10 -2.4 3,306,262 - AO356_14550 0.10 -1.1 3,306,319 + AO356_14550 0.23 -2.6 3,306,319 + AO356_14550 0.23 -0.9 3,306,319 + AO356_14550 0.23 -0.1 3,306,319 + AO356_14550 0.23 -1.2 3,306,319 + AO356_14550 0.23 -0.8 3,306,319 + AO356_14550 0.23 -1.1 3,306,320 - AO356_14550 0.23 -0.1 3,306,320 - AO356_14550 0.23 -0.1 3,306,320 - AO356_14550 0.23 +1.3 3,306,320 - AO356_14550 0.23 -2.1 3,306,320 - AO356_14550 0.23 -0.4 3,306,320 - AO356_14550 0.23 -0.1 3,306,320 - AO356_14550 0.23 -0.5 3,306,320 - AO356_14550 0.23 -0.6 3,306,320 - AO356_14550 0.23 +0.6 3,306,321 + AO356_14550 0.23 -0.3 3,306,322 - AO356_14550 0.23 -0.2 3,306,322 - AO356_14550 0.23 -1.1 3,306,322 - AO356_14550 0.23 -0.7 3,306,342 - AO356_14550 0.28 -0.6 3,306,392 + AO356_14550 0.39 -1.0 3,306,423 + AO356_14550 0.45 -3.5 3,306,423 + AO356_14550 0.45 +0.7 3,306,423 + AO356_14550 0.45 +1.5 3,306,424 - AO356_14550 0.46 -0.2 3,306,493 + AO356_14550 0.61 -0.6 3,306,493 + AO356_14550 0.61 -3.3 3,306,493 + AO356_14550 0.61 -1.3 3,306,494 - AO356_14550 0.61 -0.2 3,306,494 - AO356_14550 0.61 -0.3 3,306,494 - AO356_14550 0.61 -0.4 3,306,494 - AO356_14550 0.61 +0.7 3,306,494 - AO356_14550 0.61 -3.4 3,306,609 - AO356_14550 0.86 -0.8 3,306,632 + -0.3 3,306,638 - -1.2 3,306,669 + -0.8 3,306,669 + -1.7 3,306,669 + +1.1 3,306,678 + +0.5 3,306,678 + -0.3 3,306,678 + -0.5 3,306,710 + +0.5 3,307,099 + -0.7 3,307,099 + +0.5 3,307,099 + +1.5 3,307,099 + -0.2 3,307,102 + +1.5 3,307,102 + +0.5 3,307,102 + +0.0 3,307,102 + -1.0 3,307,113 + -0.4 3,307,136 + +0.5 3,307,169 + +0.7 3,307,206 + +0.2
Or see this region's nucleotide sequence