Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_14550

Experiment: Rifampicin 0.0016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_14540 and AO356_14545 overlap by 11 nucleotidesAO356_14545 and AO356_14550 are separated by 7 nucleotidesAO356_14550 and AO356_14555 are separated by 142 nucleotidesAO356_14555 and AO356_14560 are separated by 24 nucleotidesAO356_14560 and AO356_14565 are separated by 26 nucleotidesAO356_14565 and AO356_14570 are separated by 84 nucleotides AO356_14540: AO356_14540 - biotin--protein ligase, at 3,304,513 to 3,305,469 _14540 AO356_14545: AO356_14545 - type III pantothenate kinase, at 3,305,459 to 3,306,208 _14545 AO356_14550: AO356_14550 - hypothetical protein, at 3,306,216 to 3,306,671 _14550 AO356_14555: AO356_14555 - tRNA-Tyr, at 3,306,814 to 3,306,898 _14555 AO356_14560: AO356_14560 - tRNA-Gly, at 3,306,923 to 3,306,996 _14560 AO356_14565: AO356_14565 - tRNA-Thr, at 3,307,023 to 3,307,098 _14565 AO356_14570: AO356_14570 - elongation factor Tu, at 3,307,183 to 3,308,376 _14570 Position (kb) 3306 3307Strain fitness (log2 ratio) -3 -2 -1 0 1at 3306.216 kb on - strandat 3306.216 kb on - strandat 3306.235 kb on + strandat 3306.258 kb on + strandat 3306.258 kb on + strandat 3306.258 kb on + strandat 3306.258 kb on + strandat 3306.259 kb on - strandat 3306.259 kb on - strandat 3306.259 kb on - strandat 3306.259 kb on - strandat 3306.261 kb on + strandat 3306.261 kb on + strandat 3306.261 kb on + strandat 3306.261 kb on + strandat 3306.261 kb on + strandat 3306.261 kb on + strandat 3306.261 kb on + strandat 3306.261 kb on + strandat 3306.261 kb on + strandat 3306.261 kb on + strandat 3306.261 kb on + strandat 3306.261 kb on + strandat 3306.262 kb on - strand, within AO356_14550at 3306.262 kb on - strand, within AO356_14550at 3306.262 kb on - strand, within AO356_14550at 3306.262 kb on - strand, within AO356_14550at 3306.262 kb on - strand, within AO356_14550at 3306.262 kb on - strand, within AO356_14550at 3306.262 kb on - strand, within AO356_14550at 3306.319 kb on + strand, within AO356_14550at 3306.319 kb on + strand, within AO356_14550at 3306.319 kb on + strand, within AO356_14550at 3306.319 kb on + strand, within AO356_14550at 3306.319 kb on + strand, within AO356_14550at 3306.319 kb on + strand, within AO356_14550at 3306.320 kb on - strand, within AO356_14550at 3306.320 kb on - strand, within AO356_14550at 3306.320 kb on - strand, within AO356_14550at 3306.320 kb on - strand, within AO356_14550at 3306.320 kb on - strand, within AO356_14550at 3306.320 kb on - strand, within AO356_14550at 3306.320 kb on - strand, within AO356_14550at 3306.320 kb on - strand, within AO356_14550at 3306.320 kb on - strand, within AO356_14550at 3306.321 kb on + strand, within AO356_14550at 3306.322 kb on - strand, within AO356_14550at 3306.322 kb on - strand, within AO356_14550at 3306.322 kb on - strand, within AO356_14550at 3306.342 kb on - strand, within AO356_14550at 3306.392 kb on + strand, within AO356_14550at 3306.423 kb on + strand, within AO356_14550at 3306.423 kb on + strand, within AO356_14550at 3306.423 kb on + strand, within AO356_14550at 3306.424 kb on - strand, within AO356_14550at 3306.493 kb on + strand, within AO356_14550at 3306.493 kb on + strand, within AO356_14550at 3306.493 kb on + strand, within AO356_14550at 3306.494 kb on - strand, within AO356_14550at 3306.494 kb on - strand, within AO356_14550at 3306.494 kb on - strand, within AO356_14550at 3306.494 kb on - strand, within AO356_14550at 3306.494 kb on - strand, within AO356_14550at 3306.609 kb on - strand, within AO356_14550at 3306.632 kb on + strandat 3306.638 kb on - strandat 3306.669 kb on + strandat 3306.669 kb on + strandat 3306.669 kb on + strandat 3306.678 kb on + strandat 3306.678 kb on + strandat 3306.678 kb on + strandat 3306.710 kb on + strandat 3307.099 kb on + strandat 3307.099 kb on + strandat 3307.099 kb on + strandat 3307.099 kb on + strandat 3307.102 kb on + strandat 3307.102 kb on + strandat 3307.102 kb on + strandat 3307.102 kb on + strandat 3307.113 kb on + strandat 3307.136 kb on + strandat 3307.169 kb on + strandat 3307.206 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.0016 mg/ml
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3,306,216 - -2.9
3,306,216 - -0.5
3,306,235 + -0.4
3,306,258 + -2.5
3,306,258 + +0.1
3,306,258 + -0.2
3,306,258 + -1.7
3,306,259 - +0.4
3,306,259 - -1.7
3,306,259 - -0.9
3,306,259 - -0.5
3,306,261 + +0.1
3,306,261 + -0.2
3,306,261 + -1.5
3,306,261 + -0.8
3,306,261 + -1.7
3,306,261 + -0.3
3,306,261 + -0.4
3,306,261 + +0.2
3,306,261 + -0.6
3,306,261 + +0.3
3,306,261 + -0.1
3,306,261 + +0.2
3,306,262 - AO356_14550 0.10 -0.1
3,306,262 - AO356_14550 0.10 +0.3
3,306,262 - AO356_14550 0.10 -0.3
3,306,262 - AO356_14550 0.10 -2.1
3,306,262 - AO356_14550 0.10 +0.2
3,306,262 - AO356_14550 0.10 -2.4
3,306,262 - AO356_14550 0.10 -1.1
3,306,319 + AO356_14550 0.23 -2.6
3,306,319 + AO356_14550 0.23 -0.9
3,306,319 + AO356_14550 0.23 -0.1
3,306,319 + AO356_14550 0.23 -1.2
3,306,319 + AO356_14550 0.23 -0.8
3,306,319 + AO356_14550 0.23 -1.1
3,306,320 - AO356_14550 0.23 -0.1
3,306,320 - AO356_14550 0.23 -0.1
3,306,320 - AO356_14550 0.23 +1.3
3,306,320 - AO356_14550 0.23 -2.1
3,306,320 - AO356_14550 0.23 -0.4
3,306,320 - AO356_14550 0.23 -0.1
3,306,320 - AO356_14550 0.23 -0.5
3,306,320 - AO356_14550 0.23 -0.6
3,306,320 - AO356_14550 0.23 +0.6
3,306,321 + AO356_14550 0.23 -0.3
3,306,322 - AO356_14550 0.23 -0.2
3,306,322 - AO356_14550 0.23 -1.1
3,306,322 - AO356_14550 0.23 -0.7
3,306,342 - AO356_14550 0.28 -0.6
3,306,392 + AO356_14550 0.39 -1.0
3,306,423 + AO356_14550 0.45 -3.5
3,306,423 + AO356_14550 0.45 +0.7
3,306,423 + AO356_14550 0.45 +1.5
3,306,424 - AO356_14550 0.46 -0.2
3,306,493 + AO356_14550 0.61 -0.6
3,306,493 + AO356_14550 0.61 -3.3
3,306,493 + AO356_14550 0.61 -1.3
3,306,494 - AO356_14550 0.61 -0.2
3,306,494 - AO356_14550 0.61 -0.3
3,306,494 - AO356_14550 0.61 -0.4
3,306,494 - AO356_14550 0.61 +0.7
3,306,494 - AO356_14550 0.61 -3.4
3,306,609 - AO356_14550 0.86 -0.8
3,306,632 + -0.3
3,306,638 - -1.2
3,306,669 + -0.8
3,306,669 + -1.7
3,306,669 + +1.1
3,306,678 + +0.5
3,306,678 + -0.3
3,306,678 + -0.5
3,306,710 + +0.5
3,307,099 + -0.7
3,307,099 + +0.5
3,307,099 + +1.5
3,307,099 + -0.2
3,307,102 + +1.5
3,307,102 + +0.5
3,307,102 + +0.0
3,307,102 + -1.0
3,307,113 + -0.4
3,307,136 + +0.5
3,307,169 + +0.7
3,307,206 + +0.2

Or see this region's nucleotide sequence