Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_07920

Experiment: Rifampicin 0.0016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_07915 and AO356_07920 overlap by 4 nucleotidesAO356_07920 and AO356_07925 are separated by 155 nucleotidesAO356_07925 and AO356_07930 are separated by 154 nucleotides AO356_07915: AO356_07915 - exodeoxyribonuclease V subunit beta, at 1,767,915 to 1,771,604 _07915 AO356_07920: AO356_07920 - exodeoxyribonuclease V subunit gamma, at 1,771,601 to 1,775,053 _07920 AO356_07925: AO356_07925 - 5S ribosomal RNA, at 1,775,209 to 1,775,324 _07925 AO356_07930: AO356_07930 - 23S ribosomal RNA, at 1,775,479 to 1,778,394 _07930 Position (kb) 1771 1772 1773 1774 1775 1776Strain fitness (log2 ratio) -2 -1 0 1at 1771.209 kb on - strand, within AO356_07915at 1771.209 kb on - strand, within AO356_07915at 1771.209 kb on - strand, within AO356_07915at 1771.393 kb on - strandat 1771.782 kb on + strandat 1772.394 kb on + strand, within AO356_07920at 1772.395 kb on - strand, within AO356_07920at 1772.551 kb on - strand, within AO356_07920at 1772.551 kb on - strand, within AO356_07920at 1772.620 kb on - strand, within AO356_07920at 1773.016 kb on + strand, within AO356_07920at 1773.376 kb on - strand, within AO356_07920at 1773.790 kb on + strand, within AO356_07920at 1774.066 kb on - strand, within AO356_07920at 1774.066 kb on - strand, within AO356_07920at 1774.066 kb on - strand, within AO356_07920at 1774.195 kb on - strand, within AO356_07920at 1774.195 kb on - strand, within AO356_07920at 1775.081 kb on + strandat 1775.094 kb on + strandat 1775.095 kb on - strandat 1775.095 kb on - strandat 1775.142 kb on + strandat 1775.142 kb on + strandat 1775.142 kb on + strandat 1775.142 kb on + strandat 1775.142 kb on + strandat 1775.143 kb on - strandat 1775.175 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.0016 mg/ml
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1,771,209 - AO356_07915 0.89 -0.1
1,771,209 - AO356_07915 0.89 -0.6
1,771,209 - AO356_07915 0.89 +0.2
1,771,393 - +1.2
1,771,782 + +1.0
1,772,394 + AO356_07920 0.23 -1.5
1,772,395 - AO356_07920 0.23 +0.0
1,772,551 - AO356_07920 0.28 -1.8
1,772,551 - AO356_07920 0.28 -1.6
1,772,620 - AO356_07920 0.30 +0.4
1,773,016 + AO356_07920 0.41 +0.2
1,773,376 - AO356_07920 0.51 -0.8
1,773,790 + AO356_07920 0.63 +0.9
1,774,066 - AO356_07920 0.71 +0.2
1,774,066 - AO356_07920 0.71 +0.7
1,774,066 - AO356_07920 0.71 -1.6
1,774,195 - AO356_07920 0.75 +0.0
1,774,195 - AO356_07920 0.75 -0.4
1,775,081 + -0.2
1,775,094 + +0.5
1,775,095 - +0.2
1,775,095 - -0.1
1,775,142 + +0.4
1,775,142 + -0.1
1,775,142 + +0.3
1,775,142 + -0.0
1,775,142 + +1.3
1,775,143 - +0.2
1,775,175 - +0.7

Or see this region's nucleotide sequence