Experiment: Rifampicin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_07915 and AO356_07920 overlap by 4 nucleotides AO356_07920 and AO356_07925 are separated by 155 nucleotides AO356_07925 and AO356_07930 are separated by 154 nucleotides
AO356_07915: AO356_07915 - exodeoxyribonuclease V subunit beta, at 1,767,915 to 1,771,604
_07915
AO356_07920: AO356_07920 - exodeoxyribonuclease V subunit gamma, at 1,771,601 to 1,775,053
_07920
AO356_07925: AO356_07925 - 5S ribosomal RNA, at 1,775,209 to 1,775,324
_07925
AO356_07930: AO356_07930 - 23S ribosomal RNA, at 1,775,479 to 1,778,394
_07930
Position (kb)
1771
1772
1773
1774
1775
1776 Strain fitness (log2 ratio)
-2
-1
0
1 at 1771.209 kb on - strand, within AO356_07915 at 1771.209 kb on - strand, within AO356_07915 at 1771.209 kb on - strand, within AO356_07915 at 1771.393 kb on - strand at 1771.782 kb on + strand at 1772.394 kb on + strand, within AO356_07920 at 1772.395 kb on - strand, within AO356_07920 at 1772.551 kb on - strand, within AO356_07920 at 1772.551 kb on - strand, within AO356_07920 at 1772.620 kb on - strand, within AO356_07920 at 1773.016 kb on + strand, within AO356_07920 at 1773.376 kb on - strand, within AO356_07920 at 1773.790 kb on + strand, within AO356_07920 at 1774.066 kb on - strand, within AO356_07920 at 1774.066 kb on - strand, within AO356_07920 at 1774.066 kb on - strand, within AO356_07920 at 1774.195 kb on - strand, within AO356_07920 at 1774.195 kb on - strand, within AO356_07920 at 1775.081 kb on + strand at 1775.094 kb on + strand at 1775.095 kb on - strand at 1775.095 kb on - strand at 1775.142 kb on + strand at 1775.142 kb on + strand at 1775.142 kb on + strand at 1775.142 kb on + strand at 1775.142 kb on + strand at 1775.143 kb on - strand at 1775.175 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0016 mg/ml remove 1,771,209 - AO356_07915 0.89 -0.1 1,771,209 - AO356_07915 0.89 -0.6 1,771,209 - AO356_07915 0.89 +0.2 1,771,393 - +1.2 1,771,782 + +1.0 1,772,394 + AO356_07920 0.23 -1.5 1,772,395 - AO356_07920 0.23 +0.0 1,772,551 - AO356_07920 0.28 -1.8 1,772,551 - AO356_07920 0.28 -1.6 1,772,620 - AO356_07920 0.30 +0.4 1,773,016 + AO356_07920 0.41 +0.2 1,773,376 - AO356_07920 0.51 -0.8 1,773,790 + AO356_07920 0.63 +0.9 1,774,066 - AO356_07920 0.71 +0.2 1,774,066 - AO356_07920 0.71 +0.7 1,774,066 - AO356_07920 0.71 -1.6 1,774,195 - AO356_07920 0.75 +0.0 1,774,195 - AO356_07920 0.75 -0.4 1,775,081 + -0.2 1,775,094 + +0.5 1,775,095 - +0.2 1,775,095 - -0.1 1,775,142 + +0.4 1,775,142 + -0.1 1,775,142 + +0.3 1,775,142 + -0.0 1,775,142 + +1.3 1,775,143 - +0.2 1,775,175 - +0.7
Or see this region's nucleotide sequence