Experiment: Rifampicin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04515 and AO356_04520 are separated by 27 nucleotides AO356_04520 and AO356_04525 are separated by 4 nucleotides AO356_04525 and AO356_04530 are separated by 17 nucleotides
AO356_04515: AO356_04515 - phosphoribosylaminoimidazole-succinocarboxamide synthase, at 1,019,894 to 1,020,607
_04515
AO356_04520: AO356_04520 - MBL fold metallo-hydrolase, at 1,020,635 to 1,021,393
_04520
AO356_04525: AO356_04525 - hypothetical protein, at 1,021,398 to 1,022,513
_04525
AO356_04530: AO356_04530 - 4-hydroxy-tetrahydrodipicolinate synthase, at 1,022,531 to 1,023,409
_04530
Position (kb)
1021
1022
1023 Strain fitness (log2 ratio)
-2
-1
0
1 at 1020.624 kb on + strand at 1020.624 kb on + strand at 1020.625 kb on - strand at 1020.625 kb on - strand at 1020.625 kb on - strand at 1020.625 kb on - strand at 1020.625 kb on - strand at 1020.625 kb on - strand at 1020.625 kb on - strand at 1020.629 kb on - strand at 1020.629 kb on - strand at 1020.874 kb on - strand, within AO356_04520 at 1020.874 kb on - strand, within AO356_04520 at 1020.880 kb on - strand, within AO356_04520 at 1020.880 kb on - strand, within AO356_04520 at 1020.880 kb on - strand, within AO356_04520 at 1020.880 kb on - strand, within AO356_04520 at 1020.970 kb on - strand, within AO356_04520 at 1021.019 kb on + strand, within AO356_04520 at 1021.020 kb on - strand, within AO356_04520 at 1021.020 kb on - strand, within AO356_04520 at 1021.020 kb on - strand, within AO356_04520 at 1021.020 kb on - strand, within AO356_04520 at 1021.020 kb on - strand, within AO356_04520 at 1021.020 kb on - strand, within AO356_04520 at 1021.020 kb on - strand, within AO356_04520 at 1021.020 kb on - strand, within AO356_04520 at 1021.020 kb on - strand, within AO356_04520 at 1021.020 kb on - strand, within AO356_04520 at 1021.024 kb on - strand, within AO356_04520 at 1021.024 kb on - strand, within AO356_04520 at 1021.024 kb on - strand, within AO356_04520 at 1021.024 kb on - strand, within AO356_04520 at 1021.024 kb on - strand, within AO356_04520 at 1021.024 kb on - strand, within AO356_04520 at 1021.024 kb on - strand, within AO356_04520 at 1021.024 kb on - strand, within AO356_04520 at 1021.024 kb on - strand, within AO356_04520 at 1021.165 kb on - strand, within AO356_04520 at 1021.165 kb on - strand, within AO356_04520 at 1021.179 kb on + strand, within AO356_04520 at 1021.179 kb on + strand, within AO356_04520 at 1021.180 kb on - strand, within AO356_04520 at 1021.326 kb on + strand at 1021.326 kb on + strand at 1021.326 kb on + strand at 1021.326 kb on + strand at 1021.326 kb on + strand at 1021.327 kb on - strand at 1021.327 kb on - strand at 1021.327 kb on - strand at 1021.327 kb on - strand at 1021.327 kb on - strand at 1021.327 kb on - strand at 1021.330 kb on + strand at 1021.330 kb on + strand at 1021.330 kb on + strand at 1021.331 kb on - strand at 1021.331 kb on - strand at 1021.331 kb on - strand at 1021.331 kb on - strand at 1021.331 kb on - strand at 1021.331 kb on - strand at 1021.428 kb on + strand at 1021.428 kb on + strand at 1021.429 kb on - strand at 1021.429 kb on - strand at 1021.429 kb on - strand at 1021.633 kb on + strand, within AO356_04525 at 1021.633 kb on + strand, within AO356_04525 at 1021.633 kb on + strand, within AO356_04525 at 1021.634 kb on - strand, within AO356_04525 at 1021.634 kb on - strand, within AO356_04525 at 1021.634 kb on - strand, within AO356_04525 at 1021.634 kb on - strand, within AO356_04525 at 1021.634 kb on - strand, within AO356_04525 at 1021.634 kb on - strand, within AO356_04525 at 1021.637 kb on - strand, within AO356_04525 at 1021.637 kb on - strand, within AO356_04525 at 1021.637 kb on - strand, within AO356_04525 at 1021.637 kb on - strand, within AO356_04525 at 1021.637 kb on - strand, within AO356_04525 at 1021.637 kb on - strand, within AO356_04525 at 1021.958 kb on - strand, within AO356_04525 at 1021.958 kb on - strand, within AO356_04525 at 1022.284 kb on + strand, within AO356_04525 at 1022.284 kb on + strand, within AO356_04525 at 1022.284 kb on + strand, within AO356_04525 at 1022.285 kb on - strand, within AO356_04525 at 1022.285 kb on - strand, within AO356_04525 at 1022.405 kb on - strand at 1022.428 kb on + strand at 1022.428 kb on + strand at 1022.429 kb on - strand at 1022.474 kb on + strand at 1022.474 kb on + strand at 1022.475 kb on - strand at 1022.533 kb on - strand at 1022.533 kb on - strand at 1023.477 kb on + strand at 1023.477 kb on + strand at 1023.477 kb on + strand at 1023.477 kb on + strand at 1023.478 kb on - strand at 1023.478 kb on - strand at 1023.478 kb on - strand at 1023.478 kb on - strand at 1023.478 kb on - strand at 1023.478 kb on - strand at 1023.478 kb on - strand at 1023.478 kb on - strand at 1023.478 kb on - strand at 1023.505 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0016 mg/ml remove 1,020,624 + -1.2 1,020,624 + -1.5 1,020,625 - -0.6 1,020,625 - -0.5 1,020,625 - +0.2 1,020,625 - -0.6 1,020,625 - +0.0 1,020,625 - -0.6 1,020,625 - -0.5 1,020,629 - +1.6 1,020,629 - -0.7 1,020,874 - AO356_04520 0.31 +0.7 1,020,874 - AO356_04520 0.31 +0.6 1,020,880 - AO356_04520 0.32 -0.2 1,020,880 - AO356_04520 0.32 +0.9 1,020,880 - AO356_04520 0.32 -0.8 1,020,880 - AO356_04520 0.32 -0.1 1,020,970 - AO356_04520 0.44 +0.5 1,021,019 + AO356_04520 0.51 +0.2 1,021,020 - AO356_04520 0.51 -0.6 1,021,020 - AO356_04520 0.51 -0.7 1,021,020 - AO356_04520 0.51 -0.3 1,021,020 - AO356_04520 0.51 +0.3 1,021,020 - AO356_04520 0.51 +0.4 1,021,020 - AO356_04520 0.51 -0.8 1,021,020 - AO356_04520 0.51 +0.4 1,021,020 - AO356_04520 0.51 -0.7 1,021,020 - AO356_04520 0.51 +0.5 1,021,020 - AO356_04520 0.51 -0.4 1,021,024 - AO356_04520 0.51 -0.4 1,021,024 - AO356_04520 0.51 +0.5 1,021,024 - AO356_04520 0.51 +1.3 1,021,024 - AO356_04520 0.51 +0.3 1,021,024 - AO356_04520 0.51 -0.9 1,021,024 - AO356_04520 0.51 -0.2 1,021,024 - AO356_04520 0.51 +0.0 1,021,024 - AO356_04520 0.51 +0.4 1,021,024 - AO356_04520 0.51 +0.4 1,021,165 - AO356_04520 0.70 -0.1 1,021,165 - AO356_04520 0.70 +0.6 1,021,179 + AO356_04520 0.72 -0.8 1,021,179 + AO356_04520 0.72 -0.0 1,021,180 - AO356_04520 0.72 +0.4 1,021,326 + -0.9 1,021,326 + -0.1 1,021,326 + -2.1 1,021,326 + -0.2 1,021,326 + -0.8 1,021,327 - -0.4 1,021,327 - +0.3 1,021,327 - +0.9 1,021,327 - +0.0 1,021,327 - -1.3 1,021,327 - -0.2 1,021,330 + -1.2 1,021,330 + +1.6 1,021,330 + -1.5 1,021,331 - +0.2 1,021,331 - -1.1 1,021,331 - -0.0 1,021,331 - -0.1 1,021,331 - +0.4 1,021,331 - +0.6 1,021,428 + +0.1 1,021,428 + +1.0 1,021,429 - -0.1 1,021,429 - +1.0 1,021,429 - +1.1 1,021,633 + AO356_04525 0.21 -0.7 1,021,633 + AO356_04525 0.21 -1.2 1,021,633 + AO356_04525 0.21 -1.0 1,021,634 - AO356_04525 0.21 -0.5 1,021,634 - AO356_04525 0.21 -1.9 1,021,634 - AO356_04525 0.21 -2.7 1,021,634 - AO356_04525 0.21 +0.2 1,021,634 - AO356_04525 0.21 +0.6 1,021,634 - AO356_04525 0.21 -0.7 1,021,637 - AO356_04525 0.21 +0.7 1,021,637 - AO356_04525 0.21 +0.3 1,021,637 - AO356_04525 0.21 -0.8 1,021,637 - AO356_04525 0.21 +0.1 1,021,637 - AO356_04525 0.21 -0.4 1,021,637 - AO356_04525 0.21 -0.0 1,021,958 - AO356_04525 0.50 -1.1 1,021,958 - AO356_04525 0.50 -0.8 1,022,284 + AO356_04525 0.79 -0.4 1,022,284 + AO356_04525 0.79 -0.4 1,022,284 + AO356_04525 0.79 +0.2 1,022,285 - AO356_04525 0.79 -0.5 1,022,285 - AO356_04525 0.79 -0.6 1,022,405 - +0.2 1,022,428 + +1.0 1,022,428 + +1.2 1,022,429 - +0.0 1,022,474 + -0.8 1,022,474 + -0.7 1,022,475 - -0.5 1,022,533 - -0.0 1,022,533 - -0.2 1,023,477 + +1.1 1,023,477 + -0.8 1,023,477 + -0.0 1,023,477 + -1.0 1,023,478 - -0.7 1,023,478 - -0.5 1,023,478 - -0.4 1,023,478 - +0.3 1,023,478 - +0.1 1,023,478 - -0.9 1,023,478 - -0.0 1,023,478 - +0.4 1,023,478 - -0.0 1,023,505 + -0.2
Or see this region's nucleotide sequence