Experiment: Rifampicin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04295 and AO356_04300 are separated by 339 nucleotides AO356_04300 and AO356_04305 are separated by 353 nucleotides
AO356_04295: AO356_04295 - multidrug DMT transporter permease, at 978,117 to 978,980
_04295
AO356_04300: AO356_04300 - aspartyl beta-hydroxylase, at 979,320 to 980,258
_04300
AO356_04305: AO356_04305 - cysteine synthase, at 980,612 to 981,586
_04305
Position (kb) 979
980
981 Strain fitness (log2 ratio) -2
-1
0
1 at 978.364 kb on + strand, within AO356_04295 at 978.365 kb on - strand, within AO356_04295 at 978.424 kb on + strand, within AO356_04295 at 978.424 kb on + strand, within AO356_04295 at 978.425 kb on - strand, within AO356_04295 at 978.560 kb on - strand, within AO356_04295 at 978.560 kb on - strand, within AO356_04295 at 978.560 kb on - strand, within AO356_04295 at 978.715 kb on + strand, within AO356_04295 at 978.715 kb on + strand, within AO356_04295 at 978.715 kb on + strand, within AO356_04295 at 978.716 kb on - strand, within AO356_04295 at 978.764 kb on - strand, within AO356_04295 at 978.764 kb on - strand, within AO356_04295 at 978.954 kb on + strand at 978.954 kb on + strand at 978.955 kb on - strand at 978.984 kb on + strand at 978.985 kb on - strand at 978.993 kb on + strand at 978.994 kb on - strand at 978.994 kb on - strand at 979.117 kb on + strand at 979.117 kb on + strand at 979.118 kb on - strand at 979.130 kb on + strand at 979.130 kb on + strand at 979.131 kb on - strand at 979.131 kb on - strand at 979.289 kb on + strand at 979.289 kb on + strand at 979.289 kb on + strand at 979.290 kb on - strand at 979.290 kb on - strand at 979.290 kb on - strand at 979.291 kb on + strand at 979.310 kb on + strand at 979.310 kb on + strand at 979.311 kb on - strand at 979.311 kb on - strand at 979.311 kb on - strand at 979.322 kb on - strand at 979.322 kb on - strand at 979.462 kb on + strand, within AO356_04300 at 979.462 kb on + strand, within AO356_04300 at 979.462 kb on + strand, within AO356_04300 at 979.463 kb on - strand, within AO356_04300 at 979.642 kb on + strand, within AO356_04300 at 979.642 kb on + strand, within AO356_04300 at 979.642 kb on + strand, within AO356_04300 at 979.642 kb on + strand, within AO356_04300 at 979.642 kb on + strand, within AO356_04300 at 979.642 kb on + strand, within AO356_04300 at 979.643 kb on - strand, within AO356_04300 at 979.643 kb on - strand, within AO356_04300 at 979.643 kb on - strand, within AO356_04300 at 979.643 kb on - strand, within AO356_04300 at 979.643 kb on - strand, within AO356_04300 at 979.643 kb on - strand, within AO356_04300 at 979.643 kb on - strand, within AO356_04300 at 979.643 kb on - strand, within AO356_04300 at 979.643 kb on - strand, within AO356_04300 at 979.684 kb on + strand, within AO356_04300 at 979.747 kb on + strand, within AO356_04300 at 979.900 kb on + strand, within AO356_04300 at 979.900 kb on + strand, within AO356_04300 at 979.901 kb on - strand, within AO356_04300 at 979.912 kb on + strand, within AO356_04300 at 979.912 kb on + strand, within AO356_04300 at 979.961 kb on + strand, within AO356_04300 at 979.962 kb on - strand, within AO356_04300 at 979.984 kb on + strand, within AO356_04300 at 979.985 kb on - strand, within AO356_04300 at 979.985 kb on - strand, within AO356_04300 at 980.078 kb on - strand, within AO356_04300 at 980.107 kb on + strand, within AO356_04300 at 980.107 kb on + strand, within AO356_04300 at 980.107 kb on + strand, within AO356_04300 at 980.108 kb on - strand, within AO356_04300 at 980.108 kb on - strand, within AO356_04300 at 980.108 kb on - strand, within AO356_04300 at 980.108 kb on - strand, within AO356_04300 at 980.108 kb on - strand, within AO356_04300 at 980.108 kb on - strand, within AO356_04300 at 980.122 kb on + strand, within AO356_04300 at 980.123 kb on - strand, within AO356_04300 at 980.123 kb on - strand, within AO356_04300 at 980.123 kb on - strand, within AO356_04300 at 980.197 kb on + strand at 980.197 kb on + strand at 980.197 kb on + strand at 980.197 kb on + strand at 980.197 kb on + strand at 980.197 kb on + strand at 980.198 kb on - strand at 980.198 kb on - strand at 980.198 kb on - strand at 980.198 kb on - strand at 980.198 kb on - strand at 980.198 kb on - strand at 980.260 kb on + strand at 980.260 kb on + strand at 980.260 kb on + strand at 980.260 kb on + strand at 980.261 kb on - strand at 980.261 kb on - strand at 980.261 kb on - strand at 980.261 kb on - strand at 980.261 kb on - strand at 980.295 kb on + strand at 980.295 kb on + strand at 980.296 kb on - strand at 980.307 kb on + strand at 980.446 kb on + strand at 980.446 kb on + strand at 980.446 kb on + strand at 980.447 kb on - strand at 980.447 kb on - strand at 980.593 kb on + strand at 980.593 kb on + strand at 980.594 kb on - strand at 980.667 kb on + strand at 980.667 kb on + strand at 980.667 kb on + strand at 980.668 kb on - strand at 980.668 kb on - strand at 981.016 kb on + strand, within AO356_04305 at 981.016 kb on + strand, within AO356_04305 at 981.017 kb on - strand, within AO356_04305 at 981.017 kb on - strand, within AO356_04305 at 981.017 kb on - strand, within AO356_04305 at 981.017 kb on - strand, within AO356_04305 at 981.017 kb on - strand, within AO356_04305 at 981.019 kb on - strand, within AO356_04305 at 981.168 kb on + strand, within AO356_04305 at 981.168 kb on + strand, within AO356_04305 at 981.168 kb on + strand, within AO356_04305 at 981.168 kb on + strand, within AO356_04305 at 981.169 kb on - strand, within AO356_04305
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0016 mg/ml remove 978,364 + AO356_04295 0.29 +0.7 978,365 - AO356_04295 0.29 +0.9 978,424 + AO356_04295 0.36 +0.7 978,424 + AO356_04295 0.36 +0.9 978,425 - AO356_04295 0.36 -0.1 978,560 - AO356_04295 0.51 -0.6 978,560 - AO356_04295 0.51 -0.2 978,560 - AO356_04295 0.51 +0.2 978,715 + AO356_04295 0.69 -0.7 978,715 + AO356_04295 0.69 +0.5 978,715 + AO356_04295 0.69 -0.3 978,716 - AO356_04295 0.69 -0.6 978,764 - AO356_04295 0.75 +0.9 978,764 - AO356_04295 0.75 +0.7 978,954 + +0.2 978,954 + +0.4 978,955 - -0.0 978,984 + -0.8 978,985 - -0.5 978,993 + -0.2 978,994 - -1.6 978,994 - +0.5 979,117 + -0.5 979,117 + -0.7 979,118 - -0.0 979,130 + +1.2 979,130 + -0.1 979,131 - +0.1 979,131 - +0.2 979,289 + -0.0 979,289 + +0.5 979,289 + +0.1 979,290 - +1.1 979,290 - -0.1 979,290 - -0.3 979,291 + +0.3 979,310 + +0.1 979,310 + -0.4 979,311 - -0.4 979,311 - -0.4 979,311 - +0.3 979,322 - -0.9 979,322 - +0.4 979,462 + AO356_04300 0.15 -0.2 979,462 + AO356_04300 0.15 -0.8 979,462 + AO356_04300 0.15 -0.1 979,463 - AO356_04300 0.15 +0.1 979,642 + AO356_04300 0.34 -1.7 979,642 + AO356_04300 0.34 -0.2 979,642 + AO356_04300 0.34 -0.5 979,642 + AO356_04300 0.34 +0.4 979,642 + AO356_04300 0.34 -0.4 979,642 + AO356_04300 0.34 -0.2 979,643 - AO356_04300 0.34 -0.4 979,643 - AO356_04300 0.34 -0.9 979,643 - AO356_04300 0.34 -0.7 979,643 - AO356_04300 0.34 -0.8 979,643 - AO356_04300 0.34 -0.8 979,643 - AO356_04300 0.34 -0.6 979,643 - AO356_04300 0.34 -1.2 979,643 - AO356_04300 0.34 -0.5 979,643 - AO356_04300 0.34 -1.1 979,684 + AO356_04300 0.39 -0.3 979,747 + AO356_04300 0.45 -1.3 979,900 + AO356_04300 0.62 -0.2 979,900 + AO356_04300 0.62 -0.6 979,901 - AO356_04300 0.62 +0.3 979,912 + AO356_04300 0.63 -2.0 979,912 + AO356_04300 0.63 +0.5 979,961 + AO356_04300 0.68 -1.8 979,962 - AO356_04300 0.68 +0.3 979,984 + AO356_04300 0.71 -0.3 979,985 - AO356_04300 0.71 -0.6 979,985 - AO356_04300 0.71 -1.7 980,078 - AO356_04300 0.81 -1.5 980,107 + AO356_04300 0.84 -0.8 980,107 + AO356_04300 0.84 -1.4 980,107 + AO356_04300 0.84 -0.7 980,108 - AO356_04300 0.84 -1.2 980,108 - AO356_04300 0.84 -0.1 980,108 - AO356_04300 0.84 -0.5 980,108 - AO356_04300 0.84 -0.8 980,108 - AO356_04300 0.84 -1.3 980,108 - AO356_04300 0.84 -1.1 980,122 + AO356_04300 0.85 -0.3 980,123 - AO356_04300 0.86 +0.8 980,123 - AO356_04300 0.86 -0.7 980,123 - AO356_04300 0.86 +0.1 980,197 + -0.7 980,197 + -1.2 980,197 + +0.2 980,197 + -0.3 980,197 + -0.7 980,197 + -0.3 980,198 - +0.2 980,198 - +1.0 980,198 - +0.7 980,198 - +0.3 980,198 - -0.2 980,198 - -0.2 980,260 + -0.9 980,260 + -0.4 980,260 + +1.2 980,260 + -0.2 980,261 - -0.5 980,261 - -0.3 980,261 - -0.2 980,261 - -0.0 980,261 - -1.4 980,295 + -0.9 980,295 + +0.0 980,296 - +1.3 980,307 + -0.2 980,446 + -0.9 980,446 + -0.4 980,446 + +1.1 980,447 - +0.4 980,447 - -1.1 980,593 + +0.1 980,593 + +0.8 980,594 - -0.6 980,667 + -0.4 980,667 + -0.9 980,667 + +0.6 980,668 - -0.7 980,668 - -0.4 981,016 + AO356_04305 0.41 -0.5 981,016 + AO356_04305 0.41 +1.0 981,017 - AO356_04305 0.42 -0.2 981,017 - AO356_04305 0.42 -0.1 981,017 - AO356_04305 0.42 -0.7 981,017 - AO356_04305 0.42 -0.6 981,017 - AO356_04305 0.42 +0.0 981,019 - AO356_04305 0.42 -0.4 981,168 + AO356_04305 0.57 +0.5 981,168 + AO356_04305 0.57 -1.2 981,168 + AO356_04305 0.57 +0.2 981,168 + AO356_04305 0.57 -0.1 981,169 - AO356_04305 0.57 +0.3
Or see this region's nucleotide sequence