Experiment: Rifampicin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04050 and AO356_04055 are separated by 422 nucleotides AO356_04055 and AO356_04060 are separated by 8 nucleotides AO356_04060 and AO356_04065 are separated by 348 nucleotides
AO356_04050: AO356_04050 - ATP-dependent DNA helicase RecQ, at 901,191 to 903,317
_04050
AO356_04055: AO356_04055 - hypothetical protein, at 903,740 to 904,327
_04055
AO356_04060: AO356_04060 - hypothetical protein, at 904,336 to 904,731
_04060
AO356_04065: AO356_04065 - type I secretion target, at 905,080 to 913,647
_04065
Position (kb) 903
904
905 Strain fitness (log2 ratio) -1
0
1
2 at 902.962 kb on - strand, within AO356_04050 at 902.983 kb on + strand, within AO356_04050 at 903.243 kb on - strand at 903.317 kb on + strand at 903.317 kb on + strand at 903.317 kb on + strand at 903.318 kb on - strand at 903.318 kb on - strand at 903.390 kb on + strand at 903.391 kb on - strand at 903.391 kb on - strand at 903.444 kb on + strand at 903.444 kb on + strand at 903.444 kb on + strand at 903.444 kb on + strand at 903.444 kb on + strand at 903.445 kb on - strand at 903.619 kb on + strand at 903.619 kb on + strand at 903.619 kb on + strand at 903.619 kb on + strand at 903.619 kb on + strand at 903.665 kb on + strand at 903.666 kb on - strand at 903.685 kb on + strand at 903.686 kb on - strand at 903.701 kb on + strand at 903.702 kb on - strand at 903.720 kb on - strand at 903.739 kb on - strand at 903.816 kb on - strand, within AO356_04055 at 903.816 kb on - strand, within AO356_04055 at 903.914 kb on + strand, within AO356_04055 at 904.383 kb on - strand, within AO356_04060 at 904.504 kb on + strand, within AO356_04060 at 904.552 kb on + strand, within AO356_04060 at 904.553 kb on - strand, within AO356_04060 at 904.592 kb on - strand, within AO356_04060 at 904.592 kb on - strand, within AO356_04060 at 904.592 kb on - strand, within AO356_04060 at 904.696 kb on + strand at 904.696 kb on + strand at 904.696 kb on + strand at 904.696 kb on + strand at 904.696 kb on + strand at 904.696 kb on + strand at 904.697 kb on - strand at 904.697 kb on - strand at 904.697 kb on - strand at 904.697 kb on - strand at 904.697 kb on - strand at 904.698 kb on + strand at 904.699 kb on - strand at 904.699 kb on - strand at 904.764 kb on + strand at 904.765 kb on - strand at 904.765 kb on - strand at 904.765 kb on - strand at 904.988 kb on + strand at 904.988 kb on + strand at 904.988 kb on + strand at 904.989 kb on - strand at 904.989 kb on - strand at 905.024 kb on + strand at 905.024 kb on + strand at 905.024 kb on + strand at 905.025 kb on - strand at 905.025 kb on - strand at 905.025 kb on - strand at 905.088 kb on + strand at 905.306 kb on + strand at 905.306 kb on + strand at 905.306 kb on + strand at 905.306 kb on + strand at 905.306 kb on + strand at 905.307 kb on - strand at 905.307 kb on - strand at 905.307 kb on - strand at 905.307 kb on - strand at 905.307 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0016 mg/ml remove 902,962 - AO356_04050 0.83 -0.1 902,983 + AO356_04050 0.84 +0.0 903,243 - -0.5 903,317 + -1.4 903,317 + +1.6 903,317 + -0.4 903,318 - +1.2 903,318 - +0.4 903,390 + +0.3 903,391 - +0.2 903,391 - +0.5 903,444 + -1.1 903,444 + +0.3 903,444 + -0.5 903,444 + +0.1 903,444 + -0.1 903,445 - -0.3 903,619 + +1.0 903,619 + +0.6 903,619 + +0.9 903,619 + -0.4 903,619 + +2.0 903,665 + +0.2 903,666 - -0.6 903,685 + +0.5 903,686 - -0.8 903,701 + +0.9 903,702 - +0.0 903,720 - +0.3 903,739 - +0.3 903,816 - AO356_04055 0.13 -0.5 903,816 - AO356_04055 0.13 -1.0 903,914 + AO356_04055 0.30 +0.1 904,383 - AO356_04060 0.12 +1.0 904,504 + AO356_04060 0.42 -0.2 904,552 + AO356_04060 0.55 -0.2 904,553 - AO356_04060 0.55 +0.1 904,592 - AO356_04060 0.65 -0.0 904,592 - AO356_04060 0.65 +0.0 904,592 - AO356_04060 0.65 -0.6 904,696 + -0.4 904,696 + -0.5 904,696 + +0.6 904,696 + -0.3 904,696 + +0.3 904,696 + +0.3 904,697 - -0.2 904,697 - -0.4 904,697 - +0.0 904,697 - +0.5 904,697 - +0.3 904,698 + +0.6 904,699 - -1.4 904,699 - -0.0 904,764 + +0.1 904,765 - -0.2 904,765 - +0.3 904,765 - -0.3 904,988 + +0.2 904,988 + -1.5 904,988 + +0.5 904,989 - +0.8 904,989 - -0.3 905,024 + -0.2 905,024 + +0.4 905,024 + +0.1 905,025 - +0.5 905,025 - +1.7 905,025 - +0.4 905,088 + +0.5 905,306 + +0.7 905,306 + -0.7 905,306 + +1.2 905,306 + -0.2 905,306 + +0.3 905,307 - +0.0 905,307 - +0.2 905,307 - +0.6 905,307 - +0.2 905,307 - -0.1
Or see this region's nucleotide sequence