Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03400

Experiment: Rifampicin 0.0016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03395 and AO356_03400 are separated by 480 nucleotidesAO356_03400 and AO356_03405 are separated by 2 nucleotidesAO356_03405 and AO356_03410 overlap by 4 nucleotides AO356_03395: AO356_03395 - polymerase, at 754,946 to 755,785 _03395 AO356_03400: AO356_03400 - aminotransferase DegT, at 756,266 to 757,348 _03400 AO356_03405: AO356_03405 - serine acetyltransferase, at 757,351 to 757,926 _03405 AO356_03410: AO356_03410 - acetyltransferase, at 757,923 to 759,773 _03410 Position (kb) 756 757 758Strain fitness (log2 ratio) -3 -2 -1 0 1at 756.263 kb on - strandat 756.289 kb on + strandat 756.290 kb on - strandat 756.453 kb on - strand, within AO356_03400at 756.574 kb on - strand, within AO356_03400at 756.655 kb on + strand, within AO356_03400at 756.811 kb on + strand, within AO356_03400at 756.814 kb on + strand, within AO356_03400at 756.815 kb on - strand, within AO356_03400at 756.821 kb on + strand, within AO356_03400at 756.855 kb on + strand, within AO356_03400at 756.855 kb on + strand, within AO356_03400at 756.904 kb on - strand, within AO356_03400at 756.908 kb on - strand, within AO356_03400at 756.988 kb on + strand, within AO356_03400at 757.021 kb on + strand, within AO356_03400at 757.021 kb on + strand, within AO356_03400at 757.023 kb on + strand, within AO356_03400at 757.024 kb on - strand, within AO356_03400at 757.048 kb on - strand, within AO356_03400at 757.094 kb on - strand, within AO356_03400at 757.094 kb on - strand, within AO356_03400at 757.096 kb on - strand, within AO356_03400at 757.096 kb on - strand, within AO356_03400at 757.113 kb on - strand, within AO356_03400at 757.113 kb on - strand, within AO356_03400at 757.113 kb on - strand, within AO356_03400at 757.114 kb on + strand, within AO356_03400at 757.187 kb on + strand, within AO356_03400at 757.187 kb on + strand, within AO356_03400at 757.188 kb on - strand, within AO356_03400at 757.188 kb on - strand, within AO356_03400at 757.258 kb on - strandat 757.309 kb on + strandat 757.309 kb on + strandat 757.310 kb on - strandat 757.310 kb on - strandat 757.310 kb on - strandat 757.505 kb on + strand, within AO356_03405at 757.505 kb on + strand, within AO356_03405at 757.553 kb on + strand, within AO356_03405at 757.553 kb on + strand, within AO356_03405at 757.631 kb on + strand, within AO356_03405at 757.632 kb on - strand, within AO356_03405at 757.632 kb on - strand, within AO356_03405at 757.667 kb on + strand, within AO356_03405at 757.668 kb on - strand, within AO356_03405at 757.668 kb on - strand, within AO356_03405at 757.702 kb on + strand, within AO356_03405at 757.755 kb on + strand, within AO356_03405at 757.916 kb on + strandat 757.916 kb on + strandat 757.917 kb on - strandat 757.917 kb on - strandat 757.919 kb on + strandat 757.919 kb on + strandat 757.920 kb on - strandat 757.920 kb on - strandat 757.943 kb on + strandat 757.943 kb on + strandat 757.944 kb on - strandat 757.944 kb on - strandat 757.944 kb on - strandat 757.987 kb on + strandat 757.988 kb on - strandat 757.988 kb on - strandat 757.988 kb on - strandat 757.988 kb on - strandat 758.010 kb on + strandat 758.010 kb on + strandat 758.010 kb on + strandat 758.011 kb on - strandat 758.011 kb on - strandat 758.038 kb on + strandat 758.038 kb on + strandat 758.060 kb on - strandat 758.241 kb on + strand, within AO356_03410at 758.242 kb on - strand, within AO356_03410at 758.261 kb on + strand, within AO356_03410at 758.261 kb on + strand, within AO356_03410at 758.262 kb on - strand, within AO356_03410at 758.262 kb on - strand, within AO356_03410at 758.262 kb on - strand, within AO356_03410at 758.262 kb on - strand, within AO356_03410at 758.283 kb on - strand, within AO356_03410

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.0016 mg/ml
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756,263 - +0.4
756,289 + +0.5
756,290 - -1.2
756,453 - AO356_03400 0.17 -1.2
756,574 - AO356_03400 0.28 -0.9
756,655 + AO356_03400 0.36 -0.4
756,811 + AO356_03400 0.50 -0.7
756,814 + AO356_03400 0.51 +0.1
756,815 - AO356_03400 0.51 -1.7
756,821 + AO356_03400 0.51 -0.5
756,855 + AO356_03400 0.54 +0.3
756,855 + AO356_03400 0.54 -0.2
756,904 - AO356_03400 0.59 -2.8
756,908 - AO356_03400 0.59 -1.9
756,988 + AO356_03400 0.67 -1.1
757,021 + AO356_03400 0.70 -0.7
757,021 + AO356_03400 0.70 -0.7
757,023 + AO356_03400 0.70 -0.7
757,024 - AO356_03400 0.70 -0.0
757,048 - AO356_03400 0.72 +0.6
757,094 - AO356_03400 0.76 -2.3
757,094 - AO356_03400 0.76 -0.3
757,096 - AO356_03400 0.77 +0.3
757,096 - AO356_03400 0.77 +0.1
757,113 - AO356_03400 0.78 -1.7
757,113 - AO356_03400 0.78 -1.9
757,113 - AO356_03400 0.78 -0.3
757,114 + AO356_03400 0.78 -0.7
757,187 + AO356_03400 0.85 +0.9
757,187 + AO356_03400 0.85 -1.2
757,188 - AO356_03400 0.85 -0.6
757,188 - AO356_03400 0.85 +0.4
757,258 - -0.7
757,309 + -0.6
757,309 + -0.9
757,310 - -2.2
757,310 - -0.3
757,310 - -0.1
757,505 + AO356_03405 0.27 -0.4
757,505 + AO356_03405 0.27 -0.3
757,553 + AO356_03405 0.35 -1.0
757,553 + AO356_03405 0.35 -0.7
757,631 + AO356_03405 0.49 -0.5
757,632 - AO356_03405 0.49 -1.9
757,632 - AO356_03405 0.49 -1.2
757,667 + AO356_03405 0.55 -0.5
757,668 - AO356_03405 0.55 -2.3
757,668 - AO356_03405 0.55 -0.8
757,702 + AO356_03405 0.61 -1.5
757,755 + AO356_03405 0.70 -1.8
757,916 + -0.2
757,916 + -0.8
757,917 - -0.8
757,917 - -1.2
757,919 + -2.2
757,919 + +0.3
757,920 - +0.9
757,920 - -1.9
757,943 + -0.1
757,943 + -0.2
757,944 - -0.1
757,944 - +1.3
757,944 - -0.7
757,987 + -0.7
757,988 - -0.4
757,988 - +0.3
757,988 - -0.9
757,988 - -0.5
758,010 + +0.5
758,010 + +0.3
758,010 + -1.4
758,011 - +0.6
758,011 - +0.7
758,038 + -1.1
758,038 + -1.0
758,060 - -0.1
758,241 + AO356_03410 0.17 -0.3
758,242 - AO356_03410 0.17 -0.7
758,261 + AO356_03410 0.18 -2.0
758,261 + AO356_03410 0.18 +0.0
758,262 - AO356_03410 0.18 -0.5
758,262 - AO356_03410 0.18 +0.3
758,262 - AO356_03410 0.18 +0.3
758,262 - AO356_03410 0.18 -1.3
758,283 - AO356_03410 0.19 +1.1

Or see this region's nucleotide sequence