Experiment: Rifampicin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03330 and AO356_03335 are separated by 169 nucleotides AO356_03335 and AO356_03340 are separated by 451 nucleotides AO356_03340 and AO356_03345 are separated by 55 nucleotides
AO356_03330: AO356_03330 - GntR family transcriptional regulator, at 740,974 to 741,627
_03330
AO356_03335: AO356_03335 - competence protein ComEA, at 741,797 to 742,132
_03335
AO356_03340: AO356_03340 - hypothetical protein, at 742,584 to 743,486
_03340
AO356_03345: AO356_03345 - hypothetical protein, at 743,542 to 745,536
_03345
Position (kb) 742
743
744 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 741.656 kb on + strand at 741.657 kb on - strand at 741.665 kb on + strand at 741.665 kb on + strand at 741.669 kb on + strand at 741.669 kb on + strand at 741.669 kb on + strand at 741.670 kb on - strand at 741.670 kb on - strand at 741.670 kb on - strand at 741.903 kb on + strand, within AO356_03335 at 742.076 kb on + strand, within AO356_03335 at 742.078 kb on + strand, within AO356_03335 at 742.078 kb on + strand, within AO356_03335 at 742.078 kb on + strand, within AO356_03335 at 742.078 kb on + strand, within AO356_03335 at 742.078 kb on + strand, within AO356_03335 at 742.078 kb on + strand, within AO356_03335 at 742.078 kb on + strand, within AO356_03335 at 742.079 kb on - strand, within AO356_03335 at 742.079 kb on - strand, within AO356_03335 at 742.079 kb on - strand, within AO356_03335 at 742.113 kb on + strand at 742.119 kb on + strand at 742.120 kb on - strand at 742.132 kb on + strand at 742.133 kb on - strand at 742.156 kb on - strand at 742.156 kb on - strand at 742.156 kb on - strand at 742.194 kb on + strand at 742.207 kb on + strand at 742.207 kb on + strand at 742.208 kb on - strand at 742.208 kb on - strand at 742.291 kb on + strand at 742.292 kb on - strand at 742.292 kb on - strand at 742.411 kb on + strand at 742.417 kb on + strand at 742.453 kb on + strand at 742.453 kb on + strand at 742.461 kb on - strand at 742.461 kb on - strand at 742.464 kb on - strand at 742.464 kb on - strand at 742.483 kb on - strand at 742.483 kb on - strand at 742.483 kb on - strand at 742.537 kb on + strand at 742.655 kb on + strand at 742.655 kb on + strand at 742.658 kb on - strand at 742.669 kb on - strand at 742.738 kb on - strand, within AO356_03340 at 742.755 kb on + strand, within AO356_03340 at 742.756 kb on - strand, within AO356_03340 at 742.935 kb on + strand, within AO356_03340 at 742.944 kb on - strand, within AO356_03340 at 742.944 kb on - strand, within AO356_03340 at 742.953 kb on + strand, within AO356_03340 at 742.954 kb on - strand, within AO356_03340 at 743.165 kb on - strand, within AO356_03340 at 743.167 kb on - strand, within AO356_03340 at 743.167 kb on - strand, within AO356_03340 at 743.168 kb on + strand, within AO356_03340 at 743.169 kb on - strand, within AO356_03340 at 743.253 kb on + strand, within AO356_03340 at 743.253 kb on + strand, within AO356_03340 at 743.258 kb on - strand, within AO356_03340 at 743.369 kb on - strand, within AO356_03340 at 743.497 kb on - strand at 743.497 kb on - strand at 743.497 kb on - strand at 743.497 kb on - strand at 743.531 kb on + strand at 743.531 kb on + strand at 743.531 kb on + strand at 743.532 kb on - strand at 743.532 kb on - strand at 743.532 kb on - strand at 743.532 kb on - strand at 743.567 kb on + strand at 743.567 kb on + strand at 743.567 kb on + strand at 743.688 kb on + strand at 743.950 kb on - strand, within AO356_03345 at 743.999 kb on + strand, within AO356_03345 at 743.999 kb on + strand, within AO356_03345 at 744.091 kb on + strand, within AO356_03345 at 744.114 kb on + strand, within AO356_03345 at 744.115 kb on - strand, within AO356_03345 at 744.139 kb on + strand, within AO356_03345 at 744.140 kb on - strand, within AO356_03345 at 744.245 kb on - strand, within AO356_03345 at 744.309 kb on + strand, within AO356_03345 at 744.352 kb on - strand, within AO356_03345 at 744.354 kb on + strand, within AO356_03345 at 744.354 kb on + strand, within AO356_03345 at 744.355 kb on - strand, within AO356_03345 at 744.378 kb on + strand, within AO356_03345 at 744.378 kb on + strand, within AO356_03345 at 744.379 kb on - strand, within AO356_03345 at 744.380 kb on + strand, within AO356_03345 at 744.466 kb on - strand, within AO356_03345 at 744.470 kb on - strand, within AO356_03345 at 744.470 kb on - strand, within AO356_03345 at 744.472 kb on + strand, within AO356_03345
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0016 mg/ml remove 741,656 + -0.3 741,657 - +0.6 741,665 + +0.3 741,665 + +0.1 741,669 + -0.4 741,669 + -0.0 741,669 + +0.3 741,670 - -0.0 741,670 - +0.1 741,670 - -0.2 741,903 + AO356_03335 0.32 +0.2 742,076 + AO356_03335 0.83 +0.2 742,078 + AO356_03335 0.84 +0.5 742,078 + AO356_03335 0.84 -0.5 742,078 + AO356_03335 0.84 -0.5 742,078 + AO356_03335 0.84 -0.2 742,078 + AO356_03335 0.84 +0.7 742,078 + AO356_03335 0.84 -0.1 742,078 + AO356_03335 0.84 +0.2 742,079 - AO356_03335 0.84 -1.0 742,079 - AO356_03335 0.84 -0.7 742,079 - AO356_03335 0.84 +0.2 742,113 + +0.0 742,119 + -0.3 742,120 - -0.1 742,132 + -0.6 742,133 - +1.7 742,156 - -0.1 742,156 - +0.9 742,156 - -0.3 742,194 + +0.8 742,207 + +2.0 742,207 + +0.3 742,208 - +0.7 742,208 - +0.5 742,291 + +2.0 742,292 - -0.9 742,292 - +0.2 742,411 + +0.3 742,417 + +0.8 742,453 + +1.3 742,453 + +0.5 742,461 - +0.7 742,461 - +0.1 742,464 - -0.5 742,464 - +0.6 742,483 - +0.7 742,483 - +0.7 742,483 - +1.3 742,537 + -1.1 742,655 + -0.2 742,655 + +0.6 742,658 - +1.3 742,669 - +1.3 742,738 - AO356_03340 0.17 +0.2 742,755 + AO356_03340 0.19 -0.9 742,756 - AO356_03340 0.19 +0.5 742,935 + AO356_03340 0.39 +0.5 742,944 - AO356_03340 0.40 +0.5 742,944 - AO356_03340 0.40 +0.2 742,953 + AO356_03340 0.41 +2.5 742,954 - AO356_03340 0.41 -0.5 743,165 - AO356_03340 0.64 +1.0 743,167 - AO356_03340 0.65 -0.7 743,167 - AO356_03340 0.65 -1.2 743,168 + AO356_03340 0.65 -0.2 743,169 - AO356_03340 0.65 +0.8 743,253 + AO356_03340 0.74 -0.1 743,253 + AO356_03340 0.74 +0.6 743,258 - AO356_03340 0.75 +0.3 743,369 - AO356_03340 0.87 +0.6 743,497 - +0.1 743,497 - -0.1 743,497 - +0.9 743,497 - +0.9 743,531 + -0.3 743,531 + +1.1 743,531 + -0.4 743,532 - -0.4 743,532 - -0.3 743,532 - -0.8 743,532 - -0.7 743,567 + -0.4 743,567 + -0.9 743,567 + -1.7 743,688 + -1.5 743,950 - AO356_03345 0.20 -0.1 743,999 + AO356_03345 0.23 -0.1 743,999 + AO356_03345 0.23 -1.4 744,091 + AO356_03345 0.28 +0.3 744,114 + AO356_03345 0.29 -1.1 744,115 - AO356_03345 0.29 -1.8 744,139 + AO356_03345 0.30 -1.9 744,140 - AO356_03345 0.30 -0.4 744,245 - AO356_03345 0.35 -1.5 744,309 + AO356_03345 0.38 -0.4 744,352 - AO356_03345 0.41 -3.2 744,354 + AO356_03345 0.41 -2.1 744,354 + AO356_03345 0.41 -1.9 744,355 - AO356_03345 0.41 +0.2 744,378 + AO356_03345 0.42 -2.0 744,378 + AO356_03345 0.42 -1.1 744,379 - AO356_03345 0.42 -0.9 744,380 + AO356_03345 0.42 -0.5 744,466 - AO356_03345 0.46 -2.1 744,470 - AO356_03345 0.47 -2.4 744,470 - AO356_03345 0.47 -1.9 744,472 + AO356_03345 0.47 -2.4
Or see this region's nucleotide sequence