Experiment: Rifampicin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03325 and AO356_03330 are separated by 15 nucleotides AO356_03330 and AO356_03335 are separated by 169 nucleotides AO356_03335 and AO356_03340 are separated by 451 nucleotides
AO356_03325: AO356_03325 - hypothetical protein, at 740,107 to 740,958
_03325
AO356_03330: AO356_03330 - GntR family transcriptional regulator, at 740,974 to 741,627
_03330
AO356_03335: AO356_03335 - competence protein ComEA, at 741,797 to 742,132
_03335
AO356_03340: AO356_03340 - hypothetical protein, at 742,584 to 743,486
_03340
Position (kb) 741
742
743 Strain fitness (log2 ratio) -1
0
1
2 at 740.888 kb on + strand at 740.888 kb on + strand at 740.888 kb on + strand at 740.889 kb on - strand at 740.889 kb on - strand at 740.898 kb on + strand at 740.899 kb on - strand at 740.934 kb on - strand at 740.945 kb on + strand at 740.946 kb on - strand at 740.954 kb on + strand at 740.955 kb on - strand at 740.955 kb on - strand at 740.955 kb on - strand at 741.092 kb on + strand, within AO356_03330 at 741.092 kb on + strand, within AO356_03330 at 741.092 kb on + strand, within AO356_03330 at 741.093 kb on - strand, within AO356_03330 at 741.177 kb on + strand, within AO356_03330 at 741.178 kb on - strand, within AO356_03330 at 741.178 kb on - strand, within AO356_03330 at 741.178 kb on - strand, within AO356_03330 at 741.178 kb on - strand, within AO356_03330 at 741.178 kb on - strand, within AO356_03330 at 741.326 kb on + strand, within AO356_03330 at 741.327 kb on - strand, within AO356_03330 at 741.413 kb on - strand, within AO356_03330 at 741.413 kb on - strand, within AO356_03330 at 741.442 kb on + strand, within AO356_03330 at 741.442 kb on + strand, within AO356_03330 at 741.442 kb on + strand, within AO356_03330 at 741.442 kb on + strand, within AO356_03330 at 741.443 kb on - strand, within AO356_03330 at 741.443 kb on - strand, within AO356_03330 at 741.443 kb on - strand, within AO356_03330 at 741.443 kb on - strand, within AO356_03330 at 741.479 kb on - strand, within AO356_03330 at 741.512 kb on + strand, within AO356_03330 at 741.512 kb on + strand, within AO356_03330 at 741.513 kb on - strand, within AO356_03330 at 741.513 kb on - strand, within AO356_03330 at 741.535 kb on + strand, within AO356_03330 at 741.535 kb on + strand, within AO356_03330 at 741.546 kb on + strand, within AO356_03330 at 741.547 kb on - strand, within AO356_03330 at 741.656 kb on + strand at 741.657 kb on - strand at 741.665 kb on + strand at 741.665 kb on + strand at 741.669 kb on + strand at 741.669 kb on + strand at 741.669 kb on + strand at 741.670 kb on - strand at 741.670 kb on - strand at 741.670 kb on - strand at 741.903 kb on + strand, within AO356_03335 at 742.076 kb on + strand, within AO356_03335 at 742.078 kb on + strand, within AO356_03335 at 742.078 kb on + strand, within AO356_03335 at 742.078 kb on + strand, within AO356_03335 at 742.078 kb on + strand, within AO356_03335 at 742.078 kb on + strand, within AO356_03335 at 742.078 kb on + strand, within AO356_03335 at 742.078 kb on + strand, within AO356_03335 at 742.079 kb on - strand, within AO356_03335 at 742.079 kb on - strand, within AO356_03335 at 742.079 kb on - strand, within AO356_03335 at 742.113 kb on + strand at 742.119 kb on + strand at 742.120 kb on - strand at 742.132 kb on + strand at 742.133 kb on - strand at 742.156 kb on - strand at 742.156 kb on - strand at 742.156 kb on - strand at 742.194 kb on + strand at 742.207 kb on + strand at 742.207 kb on + strand at 742.208 kb on - strand at 742.208 kb on - strand at 742.291 kb on + strand at 742.292 kb on - strand at 742.292 kb on - strand at 742.411 kb on + strand at 742.417 kb on + strand at 742.453 kb on + strand at 742.453 kb on + strand at 742.461 kb on - strand at 742.461 kb on - strand at 742.464 kb on - strand at 742.464 kb on - strand at 742.483 kb on - strand at 742.483 kb on - strand at 742.483 kb on - strand at 742.537 kb on + strand at 742.655 kb on + strand at 742.655 kb on + strand at 742.658 kb on - strand at 742.669 kb on - strand at 742.738 kb on - strand, within AO356_03340 at 742.755 kb on + strand, within AO356_03340 at 742.756 kb on - strand, within AO356_03340 at 742.935 kb on + strand, within AO356_03340 at 742.944 kb on - strand, within AO356_03340 at 742.944 kb on - strand, within AO356_03340 at 742.953 kb on + strand, within AO356_03340 at 742.954 kb on - strand, within AO356_03340
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0016 mg/ml remove 740,888 + +0.5 740,888 + +0.0 740,888 + -0.1 740,889 - +0.7 740,889 - +1.7 740,898 + -0.7 740,899 - +0.7 740,934 - -0.1 740,945 + +0.0 740,946 - +0.1 740,954 + -0.9 740,955 - +0.7 740,955 - -1.1 740,955 - -0.2 741,092 + AO356_03330 0.18 +0.3 741,092 + AO356_03330 0.18 -0.2 741,092 + AO356_03330 0.18 -0.7 741,093 - AO356_03330 0.18 +0.5 741,177 + AO356_03330 0.31 +0.3 741,178 - AO356_03330 0.31 +0.7 741,178 - AO356_03330 0.31 +1.0 741,178 - AO356_03330 0.31 +0.3 741,178 - AO356_03330 0.31 +0.8 741,178 - AO356_03330 0.31 +0.7 741,326 + AO356_03330 0.54 +1.2 741,327 - AO356_03330 0.54 +0.1 741,413 - AO356_03330 0.67 -0.2 741,413 - AO356_03330 0.67 +0.4 741,442 + AO356_03330 0.72 -0.2 741,442 + AO356_03330 0.72 +0.6 741,442 + AO356_03330 0.72 +0.3 741,442 + AO356_03330 0.72 -0.6 741,443 - AO356_03330 0.72 -0.7 741,443 - AO356_03330 0.72 +0.3 741,443 - AO356_03330 0.72 +0.1 741,443 - AO356_03330 0.72 +0.4 741,479 - AO356_03330 0.77 +0.6 741,512 + AO356_03330 0.82 -0.5 741,512 + AO356_03330 0.82 +0.0 741,513 - AO356_03330 0.82 +0.7 741,513 - AO356_03330 0.82 -1.0 741,535 + AO356_03330 0.86 -0.3 741,535 + AO356_03330 0.86 -0.7 741,546 + AO356_03330 0.87 +0.7 741,547 - AO356_03330 0.88 -0.4 741,656 + -0.3 741,657 - +0.6 741,665 + +0.3 741,665 + +0.1 741,669 + -0.4 741,669 + -0.0 741,669 + +0.3 741,670 - -0.0 741,670 - +0.1 741,670 - -0.2 741,903 + AO356_03335 0.32 +0.2 742,076 + AO356_03335 0.83 +0.2 742,078 + AO356_03335 0.84 +0.5 742,078 + AO356_03335 0.84 -0.5 742,078 + AO356_03335 0.84 -0.5 742,078 + AO356_03335 0.84 -0.2 742,078 + AO356_03335 0.84 +0.7 742,078 + AO356_03335 0.84 -0.1 742,078 + AO356_03335 0.84 +0.2 742,079 - AO356_03335 0.84 -1.0 742,079 - AO356_03335 0.84 -0.7 742,079 - AO356_03335 0.84 +0.2 742,113 + +0.0 742,119 + -0.3 742,120 - -0.1 742,132 + -0.6 742,133 - +1.7 742,156 - -0.1 742,156 - +0.9 742,156 - -0.3 742,194 + +0.8 742,207 + +2.0 742,207 + +0.3 742,208 - +0.7 742,208 - +0.5 742,291 + +2.0 742,292 - -0.9 742,292 - +0.2 742,411 + +0.3 742,417 + +0.8 742,453 + +1.3 742,453 + +0.5 742,461 - +0.7 742,461 - +0.1 742,464 - -0.5 742,464 - +0.6 742,483 - +0.7 742,483 - +0.7 742,483 - +1.3 742,537 + -1.1 742,655 + -0.2 742,655 + +0.6 742,658 - +1.3 742,669 - +1.3 742,738 - AO356_03340 0.17 +0.2 742,755 + AO356_03340 0.19 -0.9 742,756 - AO356_03340 0.19 +0.5 742,935 + AO356_03340 0.39 +0.5 742,944 - AO356_03340 0.40 +0.5 742,944 - AO356_03340 0.40 +0.2 742,953 + AO356_03340 0.41 +2.5 742,954 - AO356_03340 0.41 -0.5
Or see this region's nucleotide sequence