Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02800

Experiment: Rifampicin 0.0016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02790 and AO356_02795 are separated by 107 nucleotidesAO356_02795 and AO356_02800 are separated by 91 nucleotidesAO356_02800 and AO356_02805 are separated by 2 nucleotidesAO356_02805 and AO356_02810 are separated by 64 nucleotides AO356_02790: AO356_02790 - porin, at 615,347 to 616,381 _02790 AO356_02795: AO356_02795 - RNA polymerase subunit sigma, at 616,489 to 617,079 _02795 AO356_02800: AO356_02800 - transporter, at 617,171 to 617,995 _02800 AO356_02805: AO356_02805 - CrfX protein, at 617,998 to 618,243 _02805 AO356_02810: AO356_02810 - CmaX protein, at 618,308 to 619,303 _02810 Position (kb) 617 618Strain fitness (log2 ratio) -2 -1 0 1at 616.464 kb on - strandat 616.469 kb on + strandat 616.470 kb on - strandat 616.470 kb on - strandat 616.477 kb on - strandat 616.477 kb on - strandat 616.985 kb on - strand, within AO356_02795at 617.049 kb on - strandat 617.101 kb on - strandat 617.101 kb on - strandat 617.128 kb on - strandat 617.128 kb on - strandat 617.150 kb on - strandat 617.150 kb on - strandat 617.150 kb on - strandat 617.150 kb on - strandat 617.150 kb on - strandat 617.155 kb on - strandat 617.482 kb on + strand, within AO356_02800at 617.483 kb on - strand, within AO356_02800at 617.483 kb on - strand, within AO356_02800at 617.491 kb on + strand, within AO356_02800at 617.492 kb on - strand, within AO356_02800at 617.492 kb on - strand, within AO356_02800at 617.533 kb on - strand, within AO356_02800at 617.640 kb on + strand, within AO356_02800at 617.640 kb on + strand, within AO356_02800at 617.721 kb on - strand, within AO356_02800at 617.934 kb on - strandat 618.024 kb on + strand, within AO356_02805at 618.157 kb on + strand, within AO356_02805at 618.157 kb on + strand, within AO356_02805at 618.243 kb on + strandat 618.243 kb on + strandat 618.243 kb on + strandat 618.244 kb on - strandat 618.427 kb on + strand, within AO356_02810at 618.428 kb on - strand, within AO356_02810at 618.431 kb on + strand, within AO356_02810at 618.432 kb on - strand, within AO356_02810at 618.432 kb on - strand, within AO356_02810at 618.432 kb on - strand, within AO356_02810at 618.432 kb on - strand, within AO356_02810at 618.615 kb on + strand, within AO356_02810at 618.751 kb on + strand, within AO356_02810at 618.753 kb on + strand, within AO356_02810at 618.753 kb on + strand, within AO356_02810at 618.754 kb on - strand, within AO356_02810at 618.754 kb on - strand, within AO356_02810at 618.754 kb on - strand, within AO356_02810at 618.840 kb on + strand, within AO356_02810at 618.840 kb on + strand, within AO356_02810at 618.840 kb on + strand, within AO356_02810at 618.840 kb on + strand, within AO356_02810at 618.841 kb on - strand, within AO356_02810at 618.841 kb on - strand, within AO356_02810at 618.850 kb on + strand, within AO356_02810at 618.850 kb on + strand, within AO356_02810at 618.850 kb on + strand, within AO356_02810at 618.851 kb on - strand, within AO356_02810at 618.851 kb on - strand, within AO356_02810at 618.851 kb on - strand, within AO356_02810at 618.852 kb on + strand, within AO356_02810at 618.852 kb on + strand, within AO356_02810at 618.852 kb on + strand, within AO356_02810at 618.852 kb on + strand, within AO356_02810at 618.852 kb on + strand, within AO356_02810at 618.852 kb on + strand, within AO356_02810at 618.852 kb on + strand, within AO356_02810at 618.852 kb on + strand, within AO356_02810at 618.852 kb on + strand, within AO356_02810at 618.853 kb on - strand, within AO356_02810at 618.853 kb on - strand, within AO356_02810at 618.853 kb on - strand, within AO356_02810at 618.853 kb on - strand, within AO356_02810at 618.853 kb on - strand, within AO356_02810at 618.853 kb on - strand, within AO356_02810

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.0016 mg/ml
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616,464 - -2.4
616,469 + -0.9
616,470 - -0.0
616,470 - -1.9
616,477 - -1.4
616,477 - -1.4
616,985 - AO356_02795 0.84 +0.6
617,049 - +0.1
617,101 - +0.8
617,101 - +0.2
617,128 - -0.7
617,128 - +1.1
617,150 - +0.5
617,150 - -0.7
617,150 - -0.3
617,150 - -0.2
617,150 - +0.6
617,155 - +0.1
617,482 + AO356_02800 0.38 +0.3
617,483 - AO356_02800 0.38 +0.4
617,483 - AO356_02800 0.38 -0.8
617,491 + AO356_02800 0.39 -0.9
617,492 - AO356_02800 0.39 +0.5
617,492 - AO356_02800 0.39 +0.9
617,533 - AO356_02800 0.44 -0.4
617,640 + AO356_02800 0.57 -0.1
617,640 + AO356_02800 0.57 -1.6
617,721 - AO356_02800 0.67 -0.5
617,934 - +0.3
618,024 + AO356_02805 0.11 +0.0
618,157 + AO356_02805 0.65 +0.0
618,157 + AO356_02805 0.65 -1.1
618,243 + -1.8
618,243 + -0.1
618,243 + -1.0
618,244 - -1.0
618,427 + AO356_02810 0.12 -0.6
618,428 - AO356_02810 0.12 +0.3
618,431 + AO356_02810 0.12 -0.0
618,432 - AO356_02810 0.12 +0.7
618,432 - AO356_02810 0.12 +0.1
618,432 - AO356_02810 0.12 -0.2
618,432 - AO356_02810 0.12 -0.1
618,615 + AO356_02810 0.31 +0.5
618,751 + AO356_02810 0.44 -0.7
618,753 + AO356_02810 0.45 +1.2
618,753 + AO356_02810 0.45 -2.2
618,754 - AO356_02810 0.45 +0.5
618,754 - AO356_02810 0.45 -1.0
618,754 - AO356_02810 0.45 -0.7
618,840 + AO356_02810 0.53 -1.9
618,840 + AO356_02810 0.53 -0.3
618,840 + AO356_02810 0.53 +0.2
618,840 + AO356_02810 0.53 -1.3
618,841 - AO356_02810 0.54 -0.1
618,841 - AO356_02810 0.54 -0.2
618,850 + AO356_02810 0.54 +0.1
618,850 + AO356_02810 0.54 -0.0
618,850 + AO356_02810 0.54 -0.1
618,851 - AO356_02810 0.55 +0.2
618,851 - AO356_02810 0.55 +0.3
618,851 - AO356_02810 0.55 -0.3
618,852 + AO356_02810 0.55 -1.4
618,852 + AO356_02810 0.55 +0.8
618,852 + AO356_02810 0.55 -0.4
618,852 + AO356_02810 0.55 -0.4
618,852 + AO356_02810 0.55 -1.1
618,852 + AO356_02810 0.55 -1.1
618,852 + AO356_02810 0.55 +0.3
618,852 + AO356_02810 0.55 -0.1
618,852 + AO356_02810 0.55 -0.8
618,853 - AO356_02810 0.55 +0.1
618,853 - AO356_02810 0.55 +0.1
618,853 - AO356_02810 0.55 -0.2
618,853 - AO356_02810 0.55 +0.4
618,853 - AO356_02810 0.55 -0.2
618,853 - AO356_02810 0.55 +0.4

Or see this region's nucleotide sequence