Experiment: Rifampicin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02455 and AO356_02460 are separated by 11 nucleotides AO356_02460 and AO356_02465 are separated by 178 nucleotides AO356_02465 and AO356_02470 are separated by 24 nucleotides AO356_02470 and AO356_02475 overlap by 8 nucleotides
AO356_02455: AO356_02455 - (Fe-S)-binding protein, at 532,932 to 534,347
_02455
AO356_02460: AO356_02460 - hypothetical protein, at 534,359 to 534,898
_02460
AO356_02465: AO356_02465 - carbonate dehydratase, at 535,077 to 537,527
_02465
AO356_02470: AO356_02470 - cytochrome C oxidase Cbb3, at 537,552 to 537,770
_02470
AO356_02475: AO356_02475 - cytochrome biogenesis protein, at 537,763 to 538,446
_02475
Position (kb) 535
536
537
538 Strain fitness (log2 ratio) -2
-1
0
1
2 at 534.084 kb on + strand, within AO356_02455 at 534.122 kb on + strand, within AO356_02455 at 534.122 kb on + strand, within AO356_02455 at 534.122 kb on + strand, within AO356_02455 at 534.122 kb on + strand, within AO356_02455 at 534.122 kb on + strand, within AO356_02455 at 534.122 kb on + strand, within AO356_02455 at 534.123 kb on - strand, within AO356_02455 at 534.126 kb on + strand, within AO356_02455 at 534.126 kb on + strand, within AO356_02455 at 534.126 kb on + strand, within AO356_02455 at 534.126 kb on + strand, within AO356_02455 at 534.126 kb on + strand, within AO356_02455 at 534.126 kb on + strand, within AO356_02455 at 534.126 kb on + strand, within AO356_02455 at 534.127 kb on - strand, within AO356_02455 at 534.127 kb on - strand, within AO356_02455 at 534.204 kb on + strand, within AO356_02455 at 534.301 kb on + strand at 534.301 kb on + strand at 534.301 kb on + strand at 534.301 kb on + strand at 534.301 kb on + strand at 534.301 kb on + strand at 534.389 kb on + strand at 534.503 kb on + strand, within AO356_02460 at 534.504 kb on - strand, within AO356_02460 at 534.504 kb on - strand, within AO356_02460 at 534.896 kb on + strand at 534.896 kb on + strand at 534.896 kb on + strand at 534.988 kb on + strand at 535.033 kb on + strand at 535.855 kb on - strand, within AO356_02465 at 536.179 kb on - strand, within AO356_02465 at 536.566 kb on + strand, within AO356_02465 at 536.567 kb on - strand, within AO356_02465 at 537.354 kb on + strand at 537.565 kb on - strand at 537.565 kb on - strand at 537.940 kb on + strand, within AO356_02475 at 537.940 kb on + strand, within AO356_02475
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0016 mg/ml remove 534,084 + AO356_02455 0.81 +0.0 534,122 + AO356_02455 0.84 +0.1 534,122 + AO356_02455 0.84 +0.7 534,122 + AO356_02455 0.84 -0.8 534,122 + AO356_02455 0.84 -0.1 534,122 + AO356_02455 0.84 +1.0 534,122 + AO356_02455 0.84 -0.2 534,123 - AO356_02455 0.84 +0.1 534,126 + AO356_02455 0.84 -0.8 534,126 + AO356_02455 0.84 +0.9 534,126 + AO356_02455 0.84 -1.2 534,126 + AO356_02455 0.84 +0.6 534,126 + AO356_02455 0.84 +0.0 534,126 + AO356_02455 0.84 -0.6 534,126 + AO356_02455 0.84 -0.9 534,127 - AO356_02455 0.84 +0.4 534,127 - AO356_02455 0.84 +0.6 534,204 + AO356_02455 0.90 +0.1 534,301 + +0.7 534,301 + -0.8 534,301 + +0.5 534,301 + +0.2 534,301 + +0.8 534,301 + +0.3 534,389 + -0.2 534,503 + AO356_02460 0.27 +0.3 534,504 - AO356_02460 0.27 -0.4 534,504 - AO356_02460 0.27 -0.6 534,896 + -1.9 534,896 + +0.8 534,896 + +1.0 534,988 + +0.1 535,033 + +2.4 535,855 - AO356_02465 0.32 -1.6 536,179 - AO356_02465 0.45 -1.9 536,566 + AO356_02465 0.61 -2.3 536,567 - AO356_02465 0.61 -1.1 537,354 + -0.1 537,565 - +0.3 537,565 - +0.2 537,940 + AO356_02475 0.26 -1.9 537,940 + AO356_02475 0.26 -0.1
Or see this region's nucleotide sequence