Experiment: Rifampicin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02185 and AO356_02190 are separated by 346 nucleotides AO356_02190 and AO356_02195 are separated by 201 nucleotides AO356_02195 and AO356_02200 are separated by 109 nucleotides
AO356_02185: AO356_02185 - chemotaxis protein CheY, at 469,893 to 471,074
_02185
AO356_02190: AO356_02190 - hypothetical protein, at 471,421 to 472,110
_02190
AO356_02195: AO356_02195 - phosphatase, at 472,312 to 472,932
_02195
AO356_02200: AO356_02200 - chromosome partitioning protein ParA, at 473,042 to 473,305
_02200
Position (kb) 471
472
473 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 471.097 kb on - strand at 471.139 kb on - strand at 471.155 kb on - strand at 471.155 kb on - strand at 471.191 kb on - strand at 471.191 kb on - strand at 471.201 kb on - strand at 471.201 kb on - strand at 471.201 kb on - strand at 471.269 kb on + strand at 471.286 kb on + strand at 471.286 kb on + strand at 471.287 kb on - strand at 471.287 kb on - strand at 471.309 kb on - strand at 471.311 kb on - strand at 471.311 kb on - strand at 471.476 kb on + strand at 471.476 kb on + strand at 471.497 kb on + strand, within AO356_02190 at 471.498 kb on - strand, within AO356_02190 at 471.498 kb on - strand, within AO356_02190 at 471.498 kb on - strand, within AO356_02190 at 471.498 kb on - strand, within AO356_02190 at 471.498 kb on - strand, within AO356_02190 at 471.498 kb on - strand, within AO356_02190 at 471.597 kb on + strand, within AO356_02190 at 471.598 kb on - strand, within AO356_02190 at 471.598 kb on - strand, within AO356_02190 at 471.598 kb on - strand, within AO356_02190 at 471.599 kb on + strand, within AO356_02190 at 471.599 kb on + strand, within AO356_02190 at 471.600 kb on - strand, within AO356_02190 at 471.618 kb on - strand, within AO356_02190 at 471.618 kb on - strand, within AO356_02190 at 471.683 kb on + strand, within AO356_02190 at 471.683 kb on + strand, within AO356_02190 at 471.684 kb on - strand, within AO356_02190 at 471.684 kb on - strand, within AO356_02190 at 471.684 kb on - strand, within AO356_02190 at 471.684 kb on - strand, within AO356_02190 at 471.932 kb on + strand, within AO356_02190 at 471.932 kb on + strand, within AO356_02190 at 471.932 kb on + strand, within AO356_02190 at 471.933 kb on - strand, within AO356_02190 at 471.933 kb on - strand, within AO356_02190 at 471.933 kb on - strand, within AO356_02190 at 471.938 kb on + strand, within AO356_02190 at 471.965 kb on + strand, within AO356_02190 at 471.965 kb on + strand, within AO356_02190 at 471.965 kb on + strand, within AO356_02190 at 471.965 kb on + strand, within AO356_02190 at 471.965 kb on + strand, within AO356_02190 at 471.966 kb on - strand, within AO356_02190 at 471.966 kb on - strand, within AO356_02190 at 471.966 kb on - strand, within AO356_02190 at 472.090 kb on + strand at 472.090 kb on + strand at 472.161 kb on - strand at 472.161 kb on - strand at 472.169 kb on + strand at 472.170 kb on - strand at 472.172 kb on + strand at 472.173 kb on - strand at 472.173 kb on - strand at 472.173 kb on - strand at 472.173 kb on - strand at 472.173 kb on - strand at 472.173 kb on - strand at 472.173 kb on - strand at 472.175 kb on - strand at 472.175 kb on - strand at 472.175 kb on - strand at 472.175 kb on - strand at 472.221 kb on - strand at 472.283 kb on - strand at 472.294 kb on + strand at 472.294 kb on + strand at 472.361 kb on + strand at 472.491 kb on + strand, within AO356_02195 at 472.595 kb on - strand, within AO356_02195 at 472.718 kb on + strand, within AO356_02195 at 472.718 kb on + strand, within AO356_02195 at 472.719 kb on - strand, within AO356_02195 at 472.915 kb on - strand at 472.915 kb on - strand at 472.965 kb on - strand at 472.965 kb on - strand at 472.965 kb on - strand at 472.970 kb on + strand at 472.970 kb on + strand at 473.021 kb on - strand at 473.027 kb on - strand at 473.035 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0016 mg/ml remove 471,097 - -0.2 471,139 - +1.5 471,155 - +0.2 471,155 - -1.0 471,191 - -0.4 471,191 - -0.6 471,201 - -0.1 471,201 - +0.9 471,201 - -0.7 471,269 + +0.4 471,286 + -1.0 471,286 + +0.1 471,287 - +1.3 471,287 - +1.0 471,309 - +0.4 471,311 - +0.2 471,311 - +0.5 471,476 + +0.3 471,476 + -0.1 471,497 + AO356_02190 0.11 -1.5 471,498 - AO356_02190 0.11 -2.6 471,498 - AO356_02190 0.11 +0.3 471,498 - AO356_02190 0.11 -1.5 471,498 - AO356_02190 0.11 -2.1 471,498 - AO356_02190 0.11 -1.8 471,498 - AO356_02190 0.11 -0.3 471,597 + AO356_02190 0.26 -3.4 471,598 - AO356_02190 0.26 -0.5 471,598 - AO356_02190 0.26 -0.1 471,598 - AO356_02190 0.26 -1.5 471,599 + AO356_02190 0.26 -0.7 471,599 + AO356_02190 0.26 -1.8 471,600 - AO356_02190 0.26 -1.3 471,618 - AO356_02190 0.29 -1.2 471,618 - AO356_02190 0.29 -0.3 471,683 + AO356_02190 0.38 -1.4 471,683 + AO356_02190 0.38 -2.5 471,684 - AO356_02190 0.38 +0.2 471,684 - AO356_02190 0.38 -0.0 471,684 - AO356_02190 0.38 -0.4 471,684 - AO356_02190 0.38 -0.6 471,932 + AO356_02190 0.74 -0.9 471,932 + AO356_02190 0.74 -1.3 471,932 + AO356_02190 0.74 +1.1 471,933 - AO356_02190 0.74 -1.1 471,933 - AO356_02190 0.74 -0.5 471,933 - AO356_02190 0.74 -0.8 471,938 + AO356_02190 0.75 -1.2 471,965 + AO356_02190 0.79 -1.0 471,965 + AO356_02190 0.79 -2.0 471,965 + AO356_02190 0.79 -0.6 471,965 + AO356_02190 0.79 -0.5 471,965 + AO356_02190 0.79 -1.1 471,966 - AO356_02190 0.79 +1.0 471,966 - AO356_02190 0.79 -0.4 471,966 - AO356_02190 0.79 -1.2 472,090 + -0.6 472,090 + +0.0 472,161 - +0.5 472,161 - +0.6 472,169 + -2.8 472,170 - +0.9 472,172 + -2.1 472,173 - +0.5 472,173 - -0.4 472,173 - -0.1 472,173 - -0.2 472,173 - -0.0 472,173 - +0.4 472,173 - +0.3 472,175 - -0.7 472,175 - +1.6 472,175 - -0.4 472,175 - -0.2 472,221 - +0.6 472,283 - +0.2 472,294 + -0.3 472,294 + -1.1 472,361 + -0.1 472,491 + AO356_02195 0.29 +1.3 472,595 - AO356_02195 0.46 +0.8 472,718 + AO356_02195 0.65 -0.2 472,718 + AO356_02195 0.65 -0.6 472,719 - AO356_02195 0.66 -1.2 472,915 - +1.2 472,915 - -2.0 472,965 - -0.6 472,965 - -0.1 472,965 - -0.3 472,970 + -0.7 472,970 + +0.5 473,021 - -0.1 473,027 - +0.7 473,035 + -0.5
Or see this region's nucleotide sequence