Experiment: Rifampicin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02060 and AO356_02065 are separated by 56 nucleotides AO356_02065 and AO356_02070 are separated by 50 nucleotides AO356_02070 and AO356_02075 are separated by 117 nucleotides
AO356_02060: AO356_02060 - phage tail protein, at 449,637 to 450,806
_02060
AO356_02065: AO356_02065 - phage tail protein, at 450,863 to 451,378
_02065
AO356_02070: AO356_02070 - phage tail protein, at 451,429 to 451,758
_02070
AO356_02075: AO356_02075 - phage tail protein, at 451,876 to 454,821
_02075
Position (kb) 450
451
452 Strain fitness (log2 ratio) -2
-1
0
1 at 449.874 kb on + strand, within AO356_02060 at 449.875 kb on - strand, within AO356_02060 at 450.100 kb on - strand, within AO356_02060 at 450.100 kb on - strand, within AO356_02060 at 450.100 kb on - strand, within AO356_02060 at 450.145 kb on - strand, within AO356_02060 at 450.283 kb on + strand, within AO356_02060 at 450.284 kb on - strand, within AO356_02060 at 450.284 kb on - strand, within AO356_02060 at 450.486 kb on + strand, within AO356_02060 at 450.487 kb on - strand, within AO356_02060 at 450.533 kb on + strand, within AO356_02060 at 450.533 kb on + strand, within AO356_02060 at 450.533 kb on + strand, within AO356_02060 at 450.534 kb on - strand, within AO356_02060 at 450.534 kb on - strand, within AO356_02060 at 450.534 kb on - strand, within AO356_02060 at 450.534 kb on - strand, within AO356_02060 at 450.534 kb on - strand, within AO356_02060 at 450.534 kb on - strand, within AO356_02060 at 450.548 kb on + strand, within AO356_02060 at 450.708 kb on + strand at 450.771 kb on + strand at 450.918 kb on - strand, within AO356_02065 at 451.168 kb on - strand, within AO356_02065 at 451.176 kb on + strand, within AO356_02065 at 451.177 kb on - strand, within AO356_02065 at 451.262 kb on + strand, within AO356_02065 at 451.263 kb on - strand, within AO356_02065 at 451.265 kb on + strand, within AO356_02065 at 451.266 kb on - strand, within AO356_02065 at 451.266 kb on - strand, within AO356_02065 at 451.338 kb on + strand at 451.339 kb on - strand at 451.428 kb on + strand at 451.428 kb on + strand at 451.428 kb on + strand at 451.598 kb on + strand, within AO356_02070 at 451.598 kb on + strand, within AO356_02070 at 451.599 kb on - strand, within AO356_02070 at 451.665 kb on + strand, within AO356_02070 at 451.757 kb on - strand at 451.757 kb on - strand at 451.890 kb on - strand at 451.890 kb on - strand at 451.904 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0016 mg/ml remove 449,874 + AO356_02060 0.20 -0.8 449,875 - AO356_02060 0.20 +0.3 450,100 - AO356_02060 0.40 +0.4 450,100 - AO356_02060 0.40 -0.4 450,100 - AO356_02060 0.40 +0.6 450,145 - AO356_02060 0.43 -0.2 450,283 + AO356_02060 0.55 +0.1 450,284 - AO356_02060 0.55 +0.1 450,284 - AO356_02060 0.55 +0.3 450,486 + AO356_02060 0.73 -0.8 450,487 - AO356_02060 0.73 +0.7 450,533 + AO356_02060 0.77 -0.4 450,533 + AO356_02060 0.77 +0.3 450,533 + AO356_02060 0.77 -0.1 450,534 - AO356_02060 0.77 -0.2 450,534 - AO356_02060 0.77 +0.2 450,534 - AO356_02060 0.77 +0.8 450,534 - AO356_02060 0.77 -1.6 450,534 - AO356_02060 0.77 +0.3 450,534 - AO356_02060 0.77 -0.6 450,548 + AO356_02060 0.78 +0.9 450,708 + -0.3 450,771 + -0.2 450,918 - AO356_02065 0.11 +0.3 451,168 - AO356_02065 0.59 -0.3 451,176 + AO356_02065 0.61 -0.6 451,177 - AO356_02065 0.61 +0.6 451,262 + AO356_02065 0.77 -0.2 451,263 - AO356_02065 0.78 -2.1 451,265 + AO356_02065 0.78 -0.8 451,266 - AO356_02065 0.78 +0.1 451,266 - AO356_02065 0.78 -0.9 451,338 + -0.4 451,339 - +0.5 451,428 + +0.7 451,428 + -0.9 451,428 + -0.1 451,598 + AO356_02070 0.51 -0.6 451,598 + AO356_02070 0.51 +0.6 451,599 - AO356_02070 0.52 +0.1 451,665 + AO356_02070 0.72 +0.2 451,757 - -0.4 451,757 - -0.3 451,890 - +0.2 451,890 - +0.0 451,904 + +1.0
Or see this region's nucleotide sequence