Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01800

Experiment: Rifampicin 0.0016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_01795 and AO356_01800 are separated by 26 nucleotidesAO356_01800 and AO356_01805 are separated by 140 nucleotides AO356_01795: AO356_01795 - hypothetical protein, at 402,535 to 403,284 _01795 AO356_01800: AO356_01800 - hypothetical protein, at 403,311 to 403,562 _01800 AO356_01805: AO356_01805 - LysR family transcriptional regulator, at 403,703 to 404,599 _01805 Position (kb) 403 404Strain fitness (log2 ratio) -2 -1 0 1at 402.321 kb on + strandat 402.322 kb on - strandat 402.322 kb on - strandat 402.623 kb on + strand, within AO356_01795at 402.623 kb on + strand, within AO356_01795at 402.623 kb on + strand, within AO356_01795at 402.623 kb on + strand, within AO356_01795at 402.623 kb on + strand, within AO356_01795at 402.624 kb on - strand, within AO356_01795at 402.624 kb on - strand, within AO356_01795at 402.624 kb on - strand, within AO356_01795at 402.627 kb on + strand, within AO356_01795at 402.627 kb on + strand, within AO356_01795at 402.627 kb on + strand, within AO356_01795at 402.627 kb on + strand, within AO356_01795at 402.627 kb on + strand, within AO356_01795at 402.628 kb on - strand, within AO356_01795at 402.628 kb on - strand, within AO356_01795at 402.628 kb on - strand, within AO356_01795at 402.628 kb on - strand, within AO356_01795at 402.628 kb on - strand, within AO356_01795at 402.628 kb on - strand, within AO356_01795at 402.628 kb on - strand, within AO356_01795at 402.629 kb on + strand, within AO356_01795at 402.629 kb on + strand, within AO356_01795at 402.629 kb on + strand, within AO356_01795at 402.629 kb on + strand, within AO356_01795at 402.629 kb on + strand, within AO356_01795at 402.629 kb on + strand, within AO356_01795at 402.629 kb on + strand, within AO356_01795at 402.630 kb on - strand, within AO356_01795at 402.630 kb on - strand, within AO356_01795at 402.630 kb on - strand, within AO356_01795at 402.630 kb on - strand, within AO356_01795at 402.630 kb on - strand, within AO356_01795at 402.630 kb on - strand, within AO356_01795at 402.640 kb on + strand, within AO356_01795at 402.641 kb on - strand, within AO356_01795at 403.154 kb on - strand, within AO356_01795at 403.204 kb on + strand, within AO356_01795at 403.205 kb on - strand, within AO356_01795at 403.271 kb on - strandat 403.277 kb on + strandat 403.278 kb on - strandat 403.278 kb on - strandat 403.278 kb on - strandat 403.312 kb on + strandat 403.312 kb on + strandat 403.312 kb on + strandat 403.312 kb on + strandat 403.555 kb on + strandat 403.555 kb on + strandat 403.556 kb on - strandat 403.556 kb on - strandat 403.556 kb on - strandat 403.556 kb on - strandat 403.556 kb on - strandat 403.556 kb on - strandat 403.586 kb on + strandat 403.628 kb on + strandat 403.628 kb on + strandat 403.628 kb on + strandat 403.628 kb on + strandat 403.628 kb on + strandat 403.628 kb on + strandat 403.628 kb on + strandat 403.628 kb on + strandat 403.628 kb on + strandat 403.628 kb on + strandat 403.628 kb on + strandat 403.628 kb on + strandat 403.628 kb on + strandat 403.629 kb on - strandat 403.629 kb on - strandat 403.629 kb on - strandat 403.629 kb on - strandat 403.713 kb on - strandat 403.713 kb on - strandat 403.727 kb on + strandat 403.832 kb on + strand, within AO356_01805at 403.832 kb on + strand, within AO356_01805at 403.832 kb on + strand, within AO356_01805at 403.832 kb on + strand, within AO356_01805at 403.832 kb on + strand, within AO356_01805at 403.832 kb on + strand, within AO356_01805at 403.832 kb on + strand, within AO356_01805at 403.832 kb on + strand, within AO356_01805at 403.833 kb on - strand, within AO356_01805at 403.833 kb on - strand, within AO356_01805at 403.833 kb on - strand, within AO356_01805at 403.833 kb on - strand, within AO356_01805at 403.833 kb on - strand, within AO356_01805at 403.834 kb on + strand, within AO356_01805at 403.835 kb on - strand, within AO356_01805at 403.905 kb on - strand, within AO356_01805at 404.025 kb on - strand, within AO356_01805at 404.466 kb on - strand, within AO356_01805at 404.472 kb on + strand, within AO356_01805at 404.472 kb on + strand, within AO356_01805at 404.513 kb on + strandat 404.513 kb on + strandat 404.514 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.0016 mg/ml
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402,321 + -0.7
402,322 - -0.1
402,322 - +0.5
402,623 + AO356_01795 0.12 -1.8
402,623 + AO356_01795 0.12 -0.9
402,623 + AO356_01795 0.12 -1.9
402,623 + AO356_01795 0.12 +0.1
402,623 + AO356_01795 0.12 -0.2
402,624 - AO356_01795 0.12 -0.1
402,624 - AO356_01795 0.12 -0.7
402,624 - AO356_01795 0.12 +0.9
402,627 + AO356_01795 0.12 +0.7
402,627 + AO356_01795 0.12 -0.3
402,627 + AO356_01795 0.12 +1.0
402,627 + AO356_01795 0.12 -0.4
402,627 + AO356_01795 0.12 -1.5
402,628 - AO356_01795 0.12 +0.4
402,628 - AO356_01795 0.12 -0.0
402,628 - AO356_01795 0.12 -2.1
402,628 - AO356_01795 0.12 -1.9
402,628 - AO356_01795 0.12 -2.3
402,628 - AO356_01795 0.12 -0.5
402,628 - AO356_01795 0.12 +0.1
402,629 + AO356_01795 0.13 +0.4
402,629 + AO356_01795 0.13 +0.4
402,629 + AO356_01795 0.13 -0.2
402,629 + AO356_01795 0.13 +0.7
402,629 + AO356_01795 0.13 -1.1
402,629 + AO356_01795 0.13 +0.0
402,629 + AO356_01795 0.13 +0.1
402,630 - AO356_01795 0.13 +0.5
402,630 - AO356_01795 0.13 +0.5
402,630 - AO356_01795 0.13 -1.6
402,630 - AO356_01795 0.13 -0.4
402,630 - AO356_01795 0.13 -0.5
402,630 - AO356_01795 0.13 +0.9
402,640 + AO356_01795 0.14 +0.1
402,641 - AO356_01795 0.14 -0.7
403,154 - AO356_01795 0.83 +0.1
403,204 + AO356_01795 0.89 +1.4
403,205 - AO356_01795 0.89 +0.4
403,271 - -0.4
403,277 + +0.1
403,278 - +0.8
403,278 - -0.5
403,278 - -0.5
403,312 + +0.2
403,312 + +0.0
403,312 + +0.7
403,312 + -1.6
403,555 + +0.9
403,555 + -0.4
403,556 - -0.9
403,556 - -0.6
403,556 - -0.2
403,556 - -0.1
403,556 - +0.8
403,556 - +1.2
403,586 + +0.5
403,628 + +0.1
403,628 + -0.3
403,628 + -0.5
403,628 + -0.5
403,628 + +0.6
403,628 + +0.6
403,628 + -0.3
403,628 + +0.1
403,628 + +0.1
403,628 + -0.3
403,628 + -0.2
403,628 + +0.1
403,628 + +0.2
403,629 - +0.1
403,629 - +0.2
403,629 - -0.0
403,629 - +0.2
403,713 - +0.7
403,713 - -0.5
403,727 + +0.1
403,832 + AO356_01805 0.14 -0.2
403,832 + AO356_01805 0.14 +0.8
403,832 + AO356_01805 0.14 +0.7
403,832 + AO356_01805 0.14 +1.5
403,832 + AO356_01805 0.14 -0.5
403,832 + AO356_01805 0.14 -0.7
403,832 + AO356_01805 0.14 -0.7
403,832 + AO356_01805 0.14 -0.2
403,833 - AO356_01805 0.14 -0.1
403,833 - AO356_01805 0.14 -0.6
403,833 - AO356_01805 0.14 +0.2
403,833 - AO356_01805 0.14 +0.2
403,833 - AO356_01805 0.14 -0.5
403,834 + AO356_01805 0.15 +0.1
403,835 - AO356_01805 0.15 +0.8
403,905 - AO356_01805 0.23 -0.5
404,025 - AO356_01805 0.36 +0.2
404,466 - AO356_01805 0.85 +0.5
404,472 + AO356_01805 0.86 +0.3
404,472 + AO356_01805 0.86 +0.5
404,513 + +0.4
404,513 + -0.4
404,514 - +0.2

Or see this region's nucleotide sequence