Experiment: Rifampicin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01620 and AO356_01625 are separated by 168 nucleotides AO356_01625 and AO356_01630 overlap by 4 nucleotides AO356_01630 and AO356_01635 are separated by 134 nucleotides
AO356_01620: AO356_01620 - catalase, at 365,660 to 366,742
_01620
AO356_01625: AO356_01625 - RNA polymerase subunit sigma-24, at 366,911 to 367,417
_01625
AO356_01630: AO356_01630 - anti-sigma factor, at 367,414 to 368,166
_01630
AO356_01635: AO356_01635 - IclR family transcriptional regulator, at 368,301 to 369,137
_01635
Position (kb) 366
367
368 Strain fitness (log2 ratio) -1
0
1
2 at 366.050 kb on + strand, within AO356_01620 at 366.051 kb on - strand, within AO356_01620 at 366.100 kb on - strand, within AO356_01620 at 366.118 kb on + strand, within AO356_01620 at 366.120 kb on + strand, within AO356_01620 at 366.120 kb on + strand, within AO356_01620 at 366.120 kb on + strand, within AO356_01620 at 366.121 kb on - strand, within AO356_01620 at 366.121 kb on - strand, within AO356_01620 at 366.136 kb on - strand, within AO356_01620 at 366.136 kb on - strand, within AO356_01620 at 366.136 kb on - strand, within AO356_01620 at 366.136 kb on - strand, within AO356_01620 at 366.273 kb on + strand, within AO356_01620 at 366.273 kb on + strand, within AO356_01620 at 366.474 kb on + strand, within AO356_01620 at 366.504 kb on + strand, within AO356_01620 at 366.505 kb on - strand, within AO356_01620 at 366.631 kb on - strand, within AO356_01620 at 366.631 kb on - strand, within AO356_01620 at 366.631 kb on - strand, within AO356_01620 at 366.810 kb on - strand at 366.824 kb on + strand at 366.828 kb on + strand at 366.828 kb on + strand at 366.847 kb on + strand at 366.848 kb on - strand at 366.894 kb on + strand at 366.895 kb on - strand at 366.903 kb on + strand at 366.904 kb on - strand at 367.286 kb on + strand, within AO356_01625 at 367.286 kb on + strand, within AO356_01625 at 367.286 kb on + strand, within AO356_01625 at 367.287 kb on - strand, within AO356_01625 at 367.453 kb on + strand at 367.501 kb on + strand, within AO356_01630 at 367.501 kb on + strand, within AO356_01630 at 367.501 kb on + strand, within AO356_01630 at 367.502 kb on - strand, within AO356_01630 at 367.819 kb on + strand, within AO356_01630 at 367.864 kb on + strand, within AO356_01630 at 367.969 kb on + strand, within AO356_01630 at 367.969 kb on + strand, within AO356_01630 at 368.002 kb on + strand, within AO356_01630 at 368.002 kb on + strand, within AO356_01630 at 368.003 kb on - strand, within AO356_01630 at 368.003 kb on - strand, within AO356_01630 at 368.003 kb on - strand, within AO356_01630 at 368.003 kb on - strand, within AO356_01630 at 368.077 kb on + strand, within AO356_01630 at 368.095 kb on + strand at 368.095 kb on + strand at 368.101 kb on + strand at 368.101 kb on + strand at 368.101 kb on + strand at 368.101 kb on + strand at 368.101 kb on + strand at 368.102 kb on - strand at 368.102 kb on - strand at 368.102 kb on - strand at 368.102 kb on - strand at 368.115 kb on - strand at 368.145 kb on + strand at 368.146 kb on - strand at 368.146 kb on - strand at 368.146 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0016 mg/ml remove 366,050 + AO356_01620 0.36 +1.1 366,051 - AO356_01620 0.36 +1.3 366,100 - AO356_01620 0.41 -0.2 366,118 + AO356_01620 0.42 +0.5 366,120 + AO356_01620 0.42 +0.1 366,120 + AO356_01620 0.42 +0.6 366,120 + AO356_01620 0.42 -0.1 366,121 - AO356_01620 0.43 -0.8 366,121 - AO356_01620 0.43 -0.0 366,136 - AO356_01620 0.44 +0.2 366,136 - AO356_01620 0.44 +1.8 366,136 - AO356_01620 0.44 -0.3 366,136 - AO356_01620 0.44 -0.0 366,273 + AO356_01620 0.57 +1.5 366,273 + AO356_01620 0.57 +0.4 366,474 + AO356_01620 0.75 +0.2 366,504 + AO356_01620 0.78 -0.6 366,505 - AO356_01620 0.78 +0.1 366,631 - AO356_01620 0.90 +0.3 366,631 - AO356_01620 0.90 -0.1 366,631 - AO356_01620 0.90 -0.5 366,810 - -0.3 366,824 + -1.2 366,828 + +1.0 366,828 + +0.5 366,847 + +0.1 366,848 - +0.5 366,894 + +0.4 366,895 - +0.5 366,903 + -1.1 366,904 - +0.2 367,286 + AO356_01625 0.74 -0.3 367,286 + AO356_01625 0.74 -0.3 367,286 + AO356_01625 0.74 -0.5 367,287 - AO356_01625 0.74 -0.3 367,453 + -0.4 367,501 + AO356_01630 0.12 +0.1 367,501 + AO356_01630 0.12 +0.7 367,501 + AO356_01630 0.12 +0.6 367,502 - AO356_01630 0.12 +0.2 367,819 + AO356_01630 0.54 -0.1 367,864 + AO356_01630 0.60 +0.3 367,969 + AO356_01630 0.74 +1.0 367,969 + AO356_01630 0.74 +0.4 368,002 + AO356_01630 0.78 +0.0 368,002 + AO356_01630 0.78 -0.2 368,003 - AO356_01630 0.78 -0.9 368,003 - AO356_01630 0.78 -0.9 368,003 - AO356_01630 0.78 -0.9 368,003 - AO356_01630 0.78 +0.3 368,077 + AO356_01630 0.88 -0.1 368,095 + -0.1 368,095 + +0.2 368,101 + -0.1 368,101 + -0.0 368,101 + -0.7 368,101 + -0.0 368,101 + +0.4 368,102 - +0.8 368,102 - +0.0 368,102 - +2.3 368,102 - +0.6 368,115 - -0.6 368,145 + +1.0 368,146 - +0.2 368,146 - -0.5 368,146 - +0.6
Or see this region's nucleotide sequence