Experiment: Rifampicin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00795 and AO356_00800 overlap by 4 nucleotides AO356_00800 and AO356_00805 overlap by 10 nucleotides
AO356_00795: AO356_00795 - 4Fe-4S ferredoxin, at 179,431 to 181,017
_00795
AO356_00800: AO356_00800 - UDP-N-acetylglucosamine 2-epimerase, at 181,014 to 182,123
_00800
AO356_00805: AO356_00805 - glycosyl transferase, at 182,114 to 183,220
_00805
Position (kb) 181
182
183 Strain fitness (log2 ratio) -1
0
1 at 180.140 kb on - strand, within AO356_00795 at 180.175 kb on + strand, within AO356_00795 at 180.559 kb on + strand, within AO356_00795 at 180.559 kb on + strand, within AO356_00795 at 180.560 kb on - strand, within AO356_00795 at 180.560 kb on - strand, within AO356_00795 at 180.742 kb on + strand, within AO356_00795 at 180.897 kb on + strand at 180.897 kb on + strand at 180.898 kb on - strand at 181.027 kb on + strand at 181.028 kb on - strand at 181.100 kb on + strand at 181.101 kb on - strand at 181.288 kb on + strand, within AO356_00800 at 181.288 kb on + strand, within AO356_00800 at 181.341 kb on + strand, within AO356_00800 at 181.661 kb on + strand, within AO356_00800 at 181.661 kb on + strand, within AO356_00800 at 181.716 kb on + strand, within AO356_00800 at 181.817 kb on + strand, within AO356_00800 at 181.818 kb on - strand, within AO356_00800 at 181.839 kb on + strand, within AO356_00800 at 181.840 kb on - strand, within AO356_00800 at 182.026 kb on - strand at 182.095 kb on + strand at 182.095 kb on + strand at 182.103 kb on + strand at 182.104 kb on - strand at 182.104 kb on - strand at 182.104 kb on - strand at 182.126 kb on + strand at 182.127 kb on - strand at 182.605 kb on - strand, within AO356_00805 at 182.605 kb on - strand, within AO356_00805 at 182.744 kb on + strand, within AO356_00805 at 182.745 kb on - strand, within AO356_00805 at 182.745 kb on - strand, within AO356_00805 at 182.787 kb on + strand, within AO356_00805 at 182.788 kb on - strand, within AO356_00805 at 182.993 kb on + strand, within AO356_00805 at 182.994 kb on - strand, within AO356_00805
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0016 mg/ml remove 180,140 - AO356_00795 0.45 +0.1 180,175 + AO356_00795 0.47 -0.7 180,559 + AO356_00795 0.71 +1.0 180,559 + AO356_00795 0.71 -1.6 180,560 - AO356_00795 0.71 +0.6 180,560 - AO356_00795 0.71 -0.8 180,742 + AO356_00795 0.83 -0.5 180,897 + +0.4 180,897 + -0.1 180,898 - -0.7 181,027 + -1.6 181,028 - +0.2 181,100 + +0.1 181,101 - +0.5 181,288 + AO356_00800 0.25 +1.0 181,288 + AO356_00800 0.25 +0.5 181,341 + AO356_00800 0.29 +0.4 181,661 + AO356_00800 0.58 +0.7 181,661 + AO356_00800 0.58 +0.2 181,716 + AO356_00800 0.63 -0.4 181,817 + AO356_00800 0.72 -0.4 181,818 - AO356_00800 0.72 +0.2 181,839 + AO356_00800 0.74 +0.3 181,840 - AO356_00800 0.74 +1.2 182,026 - +0.6 182,095 + -0.1 182,095 + +1.0 182,103 + +0.3 182,104 - +0.5 182,104 - +0.2 182,104 - -0.1 182,126 + +0.3 182,127 - -0.7 182,605 - AO356_00805 0.44 -0.5 182,605 - AO356_00805 0.44 -0.6 182,744 + AO356_00805 0.57 +0.1 182,745 - AO356_00805 0.57 +0.1 182,745 - AO356_00805 0.57 +0.5 182,787 + AO356_00805 0.61 -0.1 182,788 - AO356_00805 0.61 +1.6 182,993 + AO356_00805 0.79 -0.6 182,994 - AO356_00805 0.79 +0.3
Or see this region's nucleotide sequence