Experiment: Rifampicin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00790 and AO356_00795 overlap by 11 nucleotides AO356_00795 and AO356_00800 overlap by 4 nucleotides
AO356_00790: AO356_00790 - epimerase, at 178,344 to 179,441
_00790
AO356_00795: AO356_00795 - 4Fe-4S ferredoxin, at 179,431 to 181,017
_00795
AO356_00800: AO356_00800 - UDP-N-acetylglucosamine 2-epimerase, at 181,014 to 182,123
_00800
Position (kb) 179
180
181
182 Strain fitness (log2 ratio) -2
-1
0
1 at 178.491 kb on + strand, within AO356_00790 at 178.492 kb on - strand, within AO356_00790 at 178.492 kb on - strand, within AO356_00790 at 178.547 kb on - strand, within AO356_00790 at 178.547 kb on - strand, within AO356_00790 at 179.052 kb on + strand, within AO356_00790 at 179.924 kb on - strand, within AO356_00795 at 180.140 kb on - strand, within AO356_00795 at 180.175 kb on + strand, within AO356_00795 at 180.559 kb on + strand, within AO356_00795 at 180.559 kb on + strand, within AO356_00795 at 180.560 kb on - strand, within AO356_00795 at 180.560 kb on - strand, within AO356_00795 at 180.742 kb on + strand, within AO356_00795 at 180.897 kb on + strand at 180.897 kb on + strand at 180.898 kb on - strand at 181.027 kb on + strand at 181.028 kb on - strand at 181.100 kb on + strand at 181.101 kb on - strand at 181.288 kb on + strand, within AO356_00800 at 181.288 kb on + strand, within AO356_00800 at 181.341 kb on + strand, within AO356_00800 at 181.661 kb on + strand, within AO356_00800 at 181.661 kb on + strand, within AO356_00800 at 181.716 kb on + strand, within AO356_00800 at 181.817 kb on + strand, within AO356_00800 at 181.818 kb on - strand, within AO356_00800 at 181.839 kb on + strand, within AO356_00800 at 181.840 kb on - strand, within AO356_00800
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0016 mg/ml remove 178,491 + AO356_00790 0.13 -1.4 178,492 - AO356_00790 0.13 +0.6 178,492 - AO356_00790 0.13 -2.0 178,547 - AO356_00790 0.18 -1.1 178,547 - AO356_00790 0.18 -0.2 179,052 + AO356_00790 0.64 -1.4 179,924 - AO356_00795 0.31 +0.1 180,140 - AO356_00795 0.45 +0.1 180,175 + AO356_00795 0.47 -0.7 180,559 + AO356_00795 0.71 +1.0 180,559 + AO356_00795 0.71 -1.6 180,560 - AO356_00795 0.71 +0.6 180,560 - AO356_00795 0.71 -0.8 180,742 + AO356_00795 0.83 -0.5 180,897 + +0.4 180,897 + -0.1 180,898 - -0.7 181,027 + -1.6 181,028 - +0.2 181,100 + +0.1 181,101 - +0.5 181,288 + AO356_00800 0.25 +1.0 181,288 + AO356_00800 0.25 +0.5 181,341 + AO356_00800 0.29 +0.4 181,661 + AO356_00800 0.58 +0.7 181,661 + AO356_00800 0.58 +0.2 181,716 + AO356_00800 0.63 -0.4 181,817 + AO356_00800 0.72 -0.4 181,818 - AO356_00800 0.72 +0.2 181,839 + AO356_00800 0.74 +0.3 181,840 - AO356_00800 0.74 +1.2
Or see this region's nucleotide sequence