Experiment: Rifampicin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00775 and AO356_00780 are separated by 32 nucleotides AO356_00780 and AO356_00785 overlap by 4 nucleotides AO356_00785 and AO356_00790 are separated by 188 nucleotides
AO356_00775: AO356_00775 - glycosyl transferase family 2, at 175,950 to 176,972
_00775
AO356_00780: AO356_00780 - methyltransferase, at 177,005 to 177,751
_00780
AO356_00785: AO356_00785 - polysaccharide synthesis protein GtrA, at 177,748 to 178,155
_00785
AO356_00790: AO356_00790 - epimerase, at 178,344 to 179,441
_00790
Position (kb) 177
178
179 Strain fitness (log2 ratio) -2
-1
0
1 at 176.772 kb on + strand, within AO356_00775 at 176.773 kb on - strand, within AO356_00775 at 176.781 kb on + strand, within AO356_00775 at 176.931 kb on - strand at 177.122 kb on + strand, within AO356_00780 at 177.287 kb on + strand, within AO356_00780 at 177.287 kb on + strand, within AO356_00780 at 177.288 kb on - strand, within AO356_00780 at 177.417 kb on - strand, within AO356_00780 at 177.515 kb on + strand, within AO356_00780 at 177.516 kb on - strand, within AO356_00780 at 177.600 kb on - strand, within AO356_00780 at 177.642 kb on + strand, within AO356_00780 at 177.787 kb on + strand at 177.788 kb on - strand at 177.828 kb on - strand, within AO356_00785 at 177.956 kb on - strand, within AO356_00785 at 177.956 kb on - strand, within AO356_00785 at 177.956 kb on - strand, within AO356_00785 at 178.100 kb on + strand, within AO356_00785 at 178.100 kb on + strand, within AO356_00785 at 178.165 kb on + strand at 178.165 kb on + strand at 178.165 kb on + strand at 178.166 kb on - strand at 178.166 kb on - strand at 178.166 kb on - strand at 178.188 kb on + strand at 178.189 kb on - strand at 178.189 kb on - strand at 178.243 kb on - strand at 178.287 kb on + strand at 178.287 kb on + strand at 178.288 kb on - strand at 178.491 kb on + strand, within AO356_00790 at 178.492 kb on - strand, within AO356_00790 at 178.492 kb on - strand, within AO356_00790 at 178.547 kb on - strand, within AO356_00790 at 178.547 kb on - strand, within AO356_00790 at 179.052 kb on + strand, within AO356_00790
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0016 mg/ml remove 176,772 + AO356_00775 0.80 +0.0 176,773 - AO356_00775 0.80 +0.0 176,781 + AO356_00775 0.81 -0.4 176,931 - +0.5 177,122 + AO356_00780 0.16 -0.3 177,287 + AO356_00780 0.38 +1.2 177,287 + AO356_00780 0.38 -0.3 177,288 - AO356_00780 0.38 -0.5 177,417 - AO356_00780 0.55 +0.0 177,515 + AO356_00780 0.68 +1.4 177,516 - AO356_00780 0.68 +0.2 177,600 - AO356_00780 0.80 +0.9 177,642 + AO356_00780 0.85 +0.3 177,787 + +0.3 177,788 - -0.2 177,828 - AO356_00785 0.20 +0.8 177,956 - AO356_00785 0.51 +0.1 177,956 - AO356_00785 0.51 -1.0 177,956 - AO356_00785 0.51 +0.1 178,100 + AO356_00785 0.86 +0.1 178,100 + AO356_00785 0.86 +0.3 178,165 + +1.0 178,165 + -0.7 178,165 + -0.1 178,166 - -0.1 178,166 - +0.1 178,166 - +0.3 178,188 + +0.1 178,189 - +0.4 178,189 - -0.0 178,243 - +0.6 178,287 + +0.7 178,287 + +0.5 178,288 - +0.0 178,491 + AO356_00790 0.13 -1.4 178,492 - AO356_00790 0.13 +0.6 178,492 - AO356_00790 0.13 -2.0 178,547 - AO356_00790 0.18 -1.1 178,547 - AO356_00790 0.18 -0.2 179,052 + AO356_00790 0.64 -1.4
Or see this region's nucleotide sequence