Experiment: Rifampicin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00130 and AO356_00135 are separated by 899 nucleotides AO356_00135 and AO356_00140 are separated by 70 nucleotides AO356_00140 and AO356_00150 are separated by 648 nucleotides
AO356_00130: AO356_00130 - XRE family transcriptional regulator, at 25,301 to 25,642
_00130
AO356_00135: AO356_00135 - hypothetical protein, at 26,542 to 27,123
_00135
AO356_00140: AO356_00140 - hypothetical protein, at 27,194 to 27,451
_00140
AO356_00150: AO356_00150 - ABC transporter substrate-binding protein, at 28,100 to 28,864
_00150
Position (kb) 26
27
28 Strain fitness (log2 ratio) -2
-1
0
1
2 at 25.646 kb on + strand at 25.646 kb on + strand at 25.646 kb on + strand at 25.646 kb on + strand at 25.646 kb on + strand at 25.646 kb on + strand at 25.719 kb on + strand at 25.719 kb on + strand at 25.719 kb on + strand at 25.720 kb on - strand at 25.720 kb on - strand at 25.908 kb on + strand at 25.908 kb on + strand at 26.066 kb on + strand at 26.066 kb on + strand at 26.066 kb on + strand at 26.066 kb on + strand at 26.066 kb on + strand at 26.066 kb on + strand at 26.066 kb on + strand at 26.067 kb on - strand at 26.067 kb on - strand at 26.067 kb on - strand at 26.067 kb on - strand at 26.067 kb on - strand at 26.067 kb on - strand at 26.067 kb on - strand at 26.067 kb on - strand at 26.081 kb on - strand at 26.133 kb on - strand at 26.144 kb on + strand at 26.144 kb on + strand at 26.145 kb on - strand at 26.155 kb on + strand at 26.190 kb on - strand at 26.200 kb on + strand at 26.200 kb on + strand at 26.201 kb on - strand at 26.201 kb on - strand at 26.202 kb on + strand at 26.202 kb on + strand at 26.203 kb on - strand at 26.203 kb on - strand at 26.203 kb on - strand at 26.203 kb on - strand at 26.203 kb on - strand at 26.244 kb on + strand at 26.244 kb on + strand at 26.264 kb on - strand at 26.347 kb on - strand at 26.347 kb on - strand at 26.349 kb on + strand at 26.350 kb on - strand at 26.578 kb on + strand at 26.578 kb on + strand at 26.578 kb on + strand at 26.630 kb on + strand, within AO356_00135 at 26.631 kb on - strand, within AO356_00135 at 26.631 kb on - strand, within AO356_00135 at 26.704 kb on + strand, within AO356_00135 at 26.761 kb on + strand, within AO356_00135 at 26.762 kb on - strand, within AO356_00135 at 26.762 kb on - strand, within AO356_00135 at 26.763 kb on + strand, within AO356_00135 at 26.764 kb on - strand, within AO356_00135 at 26.764 kb on - strand, within AO356_00135 at 26.764 kb on - strand, within AO356_00135 at 26.840 kb on - strand, within AO356_00135 at 26.854 kb on - strand, within AO356_00135 at 26.896 kb on + strand, within AO356_00135 at 26.896 kb on + strand, within AO356_00135 at 26.896 kb on + strand, within AO356_00135 at 26.897 kb on - strand, within AO356_00135 at 27.105 kb on + strand at 27.105 kb on + strand at 27.106 kb on - strand at 27.106 kb on - strand at 27.106 kb on - strand at 27.106 kb on - strand at 27.106 kb on - strand at 27.106 kb on - strand at 27.139 kb on + strand at 27.139 kb on + strand at 27.139 kb on + strand at 27.140 kb on - strand at 27.140 kb on - strand at 27.140 kb on - strand at 27.239 kb on + strand, within AO356_00140 at 27.248 kb on + strand, within AO356_00140 at 27.248 kb on + strand, within AO356_00140 at 27.248 kb on + strand, within AO356_00140 at 27.249 kb on - strand, within AO356_00140 at 27.267 kb on - strand, within AO356_00140 at 27.372 kb on + strand, within AO356_00140 at 27.373 kb on - strand, within AO356_00140 at 27.373 kb on - strand, within AO356_00140 at 27.411 kb on + strand, within AO356_00140 at 27.411 kb on + strand, within AO356_00140 at 27.411 kb on + strand, within AO356_00140 at 27.411 kb on + strand, within AO356_00140 at 27.411 kb on + strand, within AO356_00140 at 27.412 kb on - strand, within AO356_00140 at 27.412 kb on - strand, within AO356_00140 at 27.412 kb on - strand, within AO356_00140 at 27.565 kb on + strand at 27.565 kb on + strand at 27.704 kb on + strand at 27.704 kb on + strand at 27.705 kb on - strand at 27.861 kb on + strand at 28.042 kb on + strand at 28.052 kb on + strand at 28.053 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0016 mg/ml remove 25,646 + +0.0 25,646 + +0.1 25,646 + -1.1 25,646 + -0.7 25,646 + -0.2 25,646 + -0.5 25,719 + +0.8 25,719 + +0.8 25,719 + -0.2 25,720 - +0.6 25,720 - +1.0 25,908 + +0.5 25,908 + -0.5 26,066 + -0.8 26,066 + +0.8 26,066 + +0.0 26,066 + +0.1 26,066 + -0.2 26,066 + +0.3 26,066 + +0.7 26,067 - +0.6 26,067 - -0.0 26,067 - +0.6 26,067 - -0.1 26,067 - -0.9 26,067 - -0.3 26,067 - +0.1 26,067 - +1.1 26,081 - +1.0 26,133 - +0.2 26,144 + +1.6 26,144 + +0.1 26,145 - +2.0 26,155 + +0.6 26,190 - -0.5 26,200 + -1.0 26,200 + -0.7 26,201 - -0.6 26,201 - +0.4 26,202 + +0.7 26,202 + -0.5 26,203 - -0.5 26,203 - -0.1 26,203 - +0.4 26,203 - -0.3 26,203 - -0.3 26,244 + +0.4 26,244 + -0.1 26,264 - -0.1 26,347 - +0.1 26,347 - +0.0 26,349 + +0.8 26,350 - -1.0 26,578 + -0.1 26,578 + -0.3 26,578 + +0.1 26,630 + AO356_00135 0.15 -0.3 26,631 - AO356_00135 0.15 +0.6 26,631 - AO356_00135 0.15 +0.7 26,704 + AO356_00135 0.28 +0.1 26,761 + AO356_00135 0.38 -0.1 26,762 - AO356_00135 0.38 +0.4 26,762 - AO356_00135 0.38 +0.9 26,763 + AO356_00135 0.38 +0.7 26,764 - AO356_00135 0.38 +0.5 26,764 - AO356_00135 0.38 +0.5 26,764 - AO356_00135 0.38 +1.1 26,840 - AO356_00135 0.51 +0.0 26,854 - AO356_00135 0.54 -0.1 26,896 + AO356_00135 0.61 -0.2 26,896 + AO356_00135 0.61 -0.0 26,896 + AO356_00135 0.61 +0.6 26,897 - AO356_00135 0.61 -1.2 27,105 + +0.5 27,105 + +0.2 27,106 - +0.9 27,106 - +0.7 27,106 - -0.6 27,106 - -0.5 27,106 - +0.6 27,106 - +0.0 27,139 + -1.4 27,139 + -0.0 27,139 + -2.3 27,140 - +0.7 27,140 - +1.1 27,140 - +0.1 27,239 + AO356_00140 0.17 -1.4 27,248 + AO356_00140 0.21 +0.5 27,248 + AO356_00140 0.21 +1.2 27,248 + AO356_00140 0.21 -0.3 27,249 - AO356_00140 0.21 -0.5 27,267 - AO356_00140 0.28 +0.2 27,372 + AO356_00140 0.69 +1.5 27,373 - AO356_00140 0.69 +0.6 27,373 - AO356_00140 0.69 +1.2 27,411 + AO356_00140 0.84 -0.3 27,411 + AO356_00140 0.84 +1.0 27,411 + AO356_00140 0.84 +0.6 27,411 + AO356_00140 0.84 -0.2 27,411 + AO356_00140 0.84 +0.0 27,412 - AO356_00140 0.84 +0.8 27,412 - AO356_00140 0.84 -0.4 27,412 - AO356_00140 0.84 +0.8 27,565 + -0.3 27,565 + +0.1 27,704 + +0.4 27,704 + -0.0 27,705 - +1.0 27,861 + -1.9 28,042 + +0.6 28,052 + +0.6 28,053 - +0.9
Or see this region's nucleotide sequence