Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2740

Experiment: MoYLS4 with Ceftazidime 0.6 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2739 and DvMF_2740 are separated by 12 nucleotidesDvMF_2740 and DvMF_2741 overlap by 4 nucleotides DvMF_2739: DvMF_2739 - response regulator receiver protein (RefSeq), at 3,465,592 to 3,467,037 _2739 DvMF_2740: DvMF_2740 - hypothetical protein (RefSeq), at 3,467,050 to 3,467,376 _2740 DvMF_2741: DvMF_2741 - type II and III secretion system protein (RefSeq), at 3,467,373 to 3,468,854 _2741 Position (kb) 3467 3468Strain fitness (log2 ratio) -1 0 1at 3466.248 kb on + strand, within DvMF_2739at 3466.248 kb on + strand, within DvMF_2739at 3466.256 kb on - strand, within DvMF_2739at 3466.264 kb on - strand, within DvMF_2739at 3466.444 kb on + strand, within DvMF_2739at 3466.846 kb on + strand, within DvMF_2739at 3467.219 kb on + strand, within DvMF_2740at 3467.260 kb on - strand, within DvMF_2740at 3467.386 kb on + strandat 3467.393 kb on - strandat 3467.459 kb on - strandat 3467.619 kb on - strand, within DvMF_2741at 3467.748 kb on + strand, within DvMF_2741at 3468.131 kb on + strand, within DvMF_2741at 3468.161 kb on - strand, within DvMF_2741at 3468.186 kb on + strand, within DvMF_2741at 3468.246 kb on - strand, within DvMF_2741at 3468.282 kb on - strand, within DvMF_2741

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.6 mg/ml
remove
3,466,248 + DvMF_2739 0.45 -0.6
3,466,248 + DvMF_2739 0.45 -0.6
3,466,256 - DvMF_2739 0.46 +0.9
3,466,264 - DvMF_2739 0.46 -0.2
3,466,444 + DvMF_2739 0.59 -0.6
3,466,846 + DvMF_2739 0.87 -0.2
3,467,219 + DvMF_2740 0.52 -1.3
3,467,260 - DvMF_2740 0.64 -1.0
3,467,386 + -1.6
3,467,393 - +0.0
3,467,459 - -0.9
3,467,619 - DvMF_2741 0.17 -0.4
3,467,748 + DvMF_2741 0.25 -0.2
3,468,131 + DvMF_2741 0.51 -1.0
3,468,161 - DvMF_2741 0.53 +0.4
3,468,186 + DvMF_2741 0.55 -0.5
3,468,246 - DvMF_2741 0.59 -0.5
3,468,282 - DvMF_2741 0.61 -0.3

Or see this region's nucleotide sequence