Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2581

Experiment: MoYLS4 with Ceftazidime 0.6 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2580 and DvMF_2581 are separated by 86 nucleotidesDvMF_2581 and DvMF_2582 are separated by 344 nucleotides DvMF_2580: DvMF_2580 - S-adenosyl-L-homocysteine hydrolase (RefSeq), at 3,263,021 to 3,264,460 _2580 DvMF_2581: DvMF_2581 - cation diffusion facilitator family transporter (RefSeq), at 3,264,547 to 3,265,524 _2581 DvMF_2582: DvMF_2582 - dihydroxyacetone kinase subunit DhaK (RefSeq), at 3,265,869 to 3,266,933 _2582 Position (kb) 3264 3265 3266Strain fitness (log2 ratio) -1 0 1at 3264.960 kb on - strand, within DvMF_2581at 3264.970 kb on + strand, within DvMF_2581at 3265.042 kb on + strand, within DvMF_2581at 3265.093 kb on - strand, within DvMF_2581at 3265.168 kb on - strand, within DvMF_2581at 3265.170 kb on + strand, within DvMF_2581at 3265.173 kb on - strand, within DvMF_2581at 3265.434 kb on + strandat 3265.785 kb on + strandat 3265.798 kb on - strandat 3266.002 kb on - strand, within DvMF_2582at 3266.062 kb on + strand, within DvMF_2582at 3266.067 kb on + strand, within DvMF_2582at 3266.102 kb on - strand, within DvMF_2582at 3266.185 kb on - strand, within DvMF_2582at 3266.291 kb on + strand, within DvMF_2582at 3266.323 kb on - strand, within DvMF_2582at 3266.373 kb on + strand, within DvMF_2582

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.6 mg/ml
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3,264,960 - DvMF_2581 0.42 -0.4
3,264,970 + DvMF_2581 0.43 -0.5
3,265,042 + DvMF_2581 0.51 -0.0
3,265,093 - DvMF_2581 0.56 +0.4
3,265,168 - DvMF_2581 0.63 -0.9
3,265,170 + DvMF_2581 0.64 -0.8
3,265,173 - DvMF_2581 0.64 -0.4
3,265,434 + -0.1
3,265,785 + -0.2
3,265,798 - +0.1
3,266,002 - DvMF_2582 0.12 -0.5
3,266,062 + DvMF_2582 0.18 -0.6
3,266,067 + DvMF_2582 0.19 -0.3
3,266,102 - DvMF_2582 0.22 -0.8
3,266,185 - DvMF_2582 0.30 -0.6
3,266,291 + DvMF_2582 0.40 -0.2
3,266,323 - DvMF_2582 0.43 -0.7
3,266,373 + DvMF_2582 0.47 -0.0

Or see this region's nucleotide sequence