Experiment: MoYLS4 with Ceftazidime 0.6 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2333 and DvMF_2334 overlap by 1 nucleotides DvMF_2334 and DvMF_2335 are separated by 219 nucleotides DvMF_2335 and DvMF_2336 are separated by 147 nucleotides
DvMF_2333: DvMF_2333 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,940,460 to 2,942,283
_2333
DvMF_2334: DvMF_2334 - response regulator receiver protein (RefSeq), at 2,942,283 to 2,942,738
_2334
DvMF_2335: DvMF_2335 - peptidase M50 (RefSeq), at 2,942,958 to 2,943,632
_2335
DvMF_2336: DvMF_2336 - tryptophanyl-tRNA synthetase (RefSeq), at 2,943,780 to 2,944,769
_2336
Position (kb)
2942
2943
2944 Strain fitness (log2 ratio)
-1
0
1 at 2942.018 kb on + strand, within DvMF_2333 at 2942.026 kb on - strand, within DvMF_2333 at 2942.074 kb on - strand, within DvMF_2333 at 2942.305 kb on - strand at 2942.553 kb on - strand, within DvMF_2334 at 2942.698 kb on + strand at 2942.790 kb on + strand at 2942.812 kb on + strand at 2943.068 kb on - strand, within DvMF_2335 at 2943.246 kb on + strand, within DvMF_2335 at 2943.472 kb on + strand, within DvMF_2335 at 2943.522 kb on + strand, within DvMF_2335 at 2943.571 kb on - strand at 2943.651 kb on + strand at 2943.651 kb on + strand at 2943.651 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.6 mg/ml remove 2,942,018 + DvMF_2333 0.85 -0.7 2,942,026 - DvMF_2333 0.86 -0.3 2,942,074 - DvMF_2333 0.88 -0.4 2,942,305 - +0.0 2,942,553 - DvMF_2334 0.59 -0.6 2,942,698 + -0.3 2,942,790 + -1.2 2,942,812 + -1.6 2,943,068 - DvMF_2335 0.16 -1.1 2,943,246 + DvMF_2335 0.43 -0.7 2,943,472 + DvMF_2335 0.76 -1.6 2,943,522 + DvMF_2335 0.84 -0.9 2,943,571 - +0.1 2,943,651 + -0.9 2,943,651 + -0.5 2,943,651 + -0.1
Or see this region's nucleotide sequence