Experiment: MoYLS4 with Ceftazidime 0.6 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2287 and DvMF_2288 overlap by 32 nucleotides DvMF_2288 and DvMF_2289 overlap by 14 nucleotides DvMF_2289 and DvMF_2290 are separated by 61 nucleotides
DvMF_2287: DvMF_2287 - flagellar M-ring protein FliF (RefSeq), at 2,874,551 to 2,876,170
_2287
DvMF_2288: DvMF_2288 - flagellar motor switch protein FliG (RefSeq), at 2,876,139 to 2,877,155
_2288
DvMF_2289: DvMF_2289 - flagellar assembly protein FliH, putative (RefSeq), at 2,877,142 to 2,877,906
_2289
DvMF_2290: DvMF_2290 - flagellar protein export ATPase FliI (RefSeq), at 2,877,968 to 2,879,374
_2290
Position (kb)
2876
2877
2878 Strain fitness (log2 ratio)
-1
0
1
2 at 2875.170 kb on + strand, within DvMF_2287 at 2875.194 kb on + strand, within DvMF_2287 at 2875.206 kb on - strand, within DvMF_2287 at 2875.295 kb on - strand, within DvMF_2287 at 2875.362 kb on + strand, within DvMF_2287 at 2875.438 kb on - strand, within DvMF_2287 at 2875.673 kb on + strand, within DvMF_2287 at 2875.729 kb on + strand, within DvMF_2287 at 2875.815 kb on + strand, within DvMF_2287 at 2875.843 kb on - strand, within DvMF_2287 at 2875.870 kb on + strand, within DvMF_2287 at 2875.914 kb on + strand, within DvMF_2287 at 2875.936 kb on - strand, within DvMF_2287 at 2876.047 kb on + strand at 2876.062 kb on + strand at 2876.124 kb on + strand at 2876.441 kb on - strand, within DvMF_2288 at 2876.586 kb on + strand, within DvMF_2288 at 2876.622 kb on - strand, within DvMF_2288 at 2876.914 kb on - strand, within DvMF_2288 at 2876.935 kb on + strand, within DvMF_2288 at 2876.956 kb on + strand, within DvMF_2288 at 2876.977 kb on - strand, within DvMF_2288 at 2877.330 kb on + strand, within DvMF_2289 at 2877.354 kb on - strand, within DvMF_2289 at 2877.360 kb on - strand, within DvMF_2289 at 2877.673 kb on - strand, within DvMF_2289 at 2877.730 kb on + strand, within DvMF_2289 at 2877.949 kb on - strand at 2877.964 kb on + strand at 2878.154 kb on + strand, within DvMF_2290
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.6 mg/ml remove 2,875,170 + DvMF_2287 0.38 +1.7 2,875,194 + DvMF_2287 0.40 +1.2 2,875,206 - DvMF_2287 0.40 +1.7 2,875,295 - DvMF_2287 0.46 +2.0 2,875,362 + DvMF_2287 0.50 +1.3 2,875,438 - DvMF_2287 0.55 +1.2 2,875,673 + DvMF_2287 0.69 +0.6 2,875,729 + DvMF_2287 0.73 +1.4 2,875,815 + DvMF_2287 0.78 +1.1 2,875,843 - DvMF_2287 0.80 +1.3 2,875,870 + DvMF_2287 0.81 +0.8 2,875,914 + DvMF_2287 0.84 +1.2 2,875,936 - DvMF_2287 0.85 +1.0 2,876,047 + +1.5 2,876,062 + +1.2 2,876,124 + +0.1 2,876,441 - DvMF_2288 0.30 +0.9 2,876,586 + DvMF_2288 0.44 +1.2 2,876,622 - DvMF_2288 0.47 +1.0 2,876,914 - DvMF_2288 0.76 +2.2 2,876,935 + DvMF_2288 0.78 +1.2 2,876,956 + DvMF_2288 0.80 +1.5 2,876,977 - DvMF_2288 0.82 +1.0 2,877,330 + DvMF_2289 0.25 +0.9 2,877,354 - DvMF_2289 0.28 +0.9 2,877,360 - DvMF_2289 0.28 +1.2 2,877,673 - DvMF_2289 0.69 +0.9 2,877,730 + DvMF_2289 0.77 +0.7 2,877,949 - -0.3 2,877,964 + -0.3 2,878,154 + DvMF_2290 0.13 +0.8
Or see this region's nucleotide sequence