Experiment: MoYLS4 with Ceftazidime 0.6 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2107 and DvMF_2108 overlap by 13 nucleotides DvMF_2108 and DvMF_2109 overlap by 4 nucleotides
DvMF_2107: DvMF_2107 - response regulator receiver protein (RefSeq), at 2,624,260 to 2,626,566
_2107
DvMF_2108: DvMF_2108 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,626,554 to 2,628,242
_2108
DvMF_2109: DvMF_2109 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 2,628,239 to 2,629,786
_2109
Position (kb)
2626
2627
2628
2629 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2625.907 kb on + strand, within DvMF_2107 at 2625.950 kb on + strand, within DvMF_2107 at 2626.096 kb on - strand, within DvMF_2107 at 2626.249 kb on - strand, within DvMF_2107 at 2626.669 kb on - strand at 2626.685 kb on + strand at 2626.763 kb on + strand, within DvMF_2108 at 2626.862 kb on + strand, within DvMF_2108 at 2626.864 kb on + strand, within DvMF_2108 at 2627.065 kb on + strand, within DvMF_2108 at 2627.214 kb on + strand, within DvMF_2108 at 2627.214 kb on + strand, within DvMF_2108 at 2627.224 kb on + strand, within DvMF_2108 at 2627.444 kb on - strand, within DvMF_2108 at 2627.503 kb on + strand, within DvMF_2108 at 2627.597 kb on - strand, within DvMF_2108 at 2627.654 kb on - strand, within DvMF_2108 at 2627.762 kb on + strand, within DvMF_2108 at 2627.966 kb on + strand, within DvMF_2108 at 2628.037 kb on + strand, within DvMF_2108 at 2628.316 kb on - strand at 2628.511 kb on + strand, within DvMF_2109 at 2629.104 kb on - strand, within DvMF_2109 at 2629.174 kb on - strand, within DvMF_2109 at 2629.240 kb on + strand, within DvMF_2109
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.6 mg/ml remove 2,625,907 + DvMF_2107 0.71 -0.5 2,625,950 + DvMF_2107 0.73 -0.6 2,626,096 - DvMF_2107 0.80 -0.2 2,626,249 - DvMF_2107 0.86 -0.8 2,626,669 - -1.0 2,626,685 + -0.2 2,626,763 + DvMF_2108 0.12 -0.6 2,626,862 + DvMF_2108 0.18 -0.9 2,626,864 + DvMF_2108 0.18 -1.1 2,627,065 + DvMF_2108 0.30 +2.1 2,627,214 + DvMF_2108 0.39 -0.4 2,627,214 + DvMF_2108 0.39 -0.5 2,627,224 + DvMF_2108 0.40 -0.4 2,627,444 - DvMF_2108 0.53 +0.3 2,627,503 + DvMF_2108 0.56 -0.7 2,627,597 - DvMF_2108 0.62 -0.9 2,627,654 - DvMF_2108 0.65 -0.1 2,627,762 + DvMF_2108 0.72 -0.8 2,627,966 + DvMF_2108 0.84 -0.1 2,628,037 + DvMF_2108 0.88 -0.5 2,628,316 - -0.6 2,628,511 + DvMF_2109 0.18 -0.5 2,629,104 - DvMF_2109 0.56 -0.4 2,629,174 - DvMF_2109 0.60 -0.6 2,629,240 + DvMF_2109 0.65 -2.1
Or see this region's nucleotide sequence