Experiment: MoYLS4 with Ceftazidime 0.6 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1777 and DvMF_1778 are separated by 131 nucleotides DvMF_1778 and DvMF_1779 are separated by 66 nucleotides DvMF_1779 and DvMF_1780 are separated by 205 nucleotides
DvMF_1777: DvMF_1777 - prophage PSPPH06, putative reverse transcriptase/maturase (RefSeq), at 2,176,242 to 2,177,597
_1777
DvMF_1778: DvMF_1778 - hypothetical protein (RefSeq), at 2,177,729 to 2,178,382
_1778
DvMF_1779: DvMF_1779 - helix-turn-helix protein, CopG family (RefSeq), at 2,178,449 to 2,178,697
_1779
DvMF_1780: DvMF_1780 - Aldehyde Dehydrogenase (RefSeq), at 2,178,903 to 2,180,585
_1780
Position (kb)
2178
2179 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2177.954 kb on + strand, within DvMF_1778 at 2178.403 kb on + strand at 2178.403 kb on + strand at 2178.403 kb on + strand at 2178.505 kb on - strand, within DvMF_1779 at 2178.610 kb on + strand, within DvMF_1779 at 2178.619 kb on - strand, within DvMF_1779 at 2178.643 kb on + strand, within DvMF_1779 at 2178.668 kb on - strand, within DvMF_1779 at 2178.700 kb on - strand at 2178.778 kb on + strand at 2178.828 kb on + strand at 2178.846 kb on - strand at 2178.846 kb on - strand at 2179.299 kb on + strand, within DvMF_1780 at 2179.567 kb on + strand, within DvMF_1780 at 2179.567 kb on + strand, within DvMF_1780 at 2179.575 kb on - strand, within DvMF_1780 at 2179.638 kb on + strand, within DvMF_1780 at 2179.638 kb on + strand, within DvMF_1780 at 2179.638 kb on + strand, within DvMF_1780 at 2179.646 kb on - strand, within DvMF_1780
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.6 mg/ml remove 2,177,954 + DvMF_1778 0.34 -1.1 2,178,403 + -0.3 2,178,403 + +0.1 2,178,403 + -0.5 2,178,505 - DvMF_1779 0.22 -2.7 2,178,610 + DvMF_1779 0.65 -0.3 2,178,619 - DvMF_1779 0.68 -0.7 2,178,643 + DvMF_1779 0.78 -0.6 2,178,668 - DvMF_1779 0.88 -0.3 2,178,700 - -0.6 2,178,778 + -0.5 2,178,828 + +2.4 2,178,846 - -0.2 2,178,846 - -0.8 2,179,299 + DvMF_1780 0.24 -1.2 2,179,567 + DvMF_1780 0.39 -0.2 2,179,567 + DvMF_1780 0.39 -0.1 2,179,575 - DvMF_1780 0.40 -0.7 2,179,638 + DvMF_1780 0.44 -0.8 2,179,638 + DvMF_1780 0.44 -0.3 2,179,638 + DvMF_1780 0.44 -2.7 2,179,646 - DvMF_1780 0.44 -0.8
Or see this region's nucleotide sequence