Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1574

Experiment: MoYLS4 with Ceftazidime 0.6 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1573 and DvMF_1574 are separated by 48 nucleotidesDvMF_1574 and DvMF_1575 are separated by 94 nucleotides DvMF_1573: DvMF_1573 - Undecaprenyl-phosphate galactose phosphotransferase, WbaP (RefSeq), at 1,939,091 to 1,940,503 _1573 DvMF_1574: DvMF_1574 - glycosyl transferase family 9 (RefSeq), at 1,940,552 to 1,941,691 _1574 DvMF_1575: DvMF_1575 - sulfate transporter (RefSeq), at 1,941,786 to 1,943,498 _1575 Position (kb) 1940 1941 1942Strain fitness (log2 ratio) -3 -2 -1 0 1at 1939.709 kb on + strand, within DvMF_1573at 1939.717 kb on - strand, within DvMF_1573at 1939.774 kb on + strand, within DvMF_1573at 1939.922 kb on - strand, within DvMF_1573at 1939.971 kb on - strand, within DvMF_1573at 1940.013 kb on + strand, within DvMF_1573at 1940.021 kb on - strand, within DvMF_1573at 1940.096 kb on - strand, within DvMF_1573at 1940.466 kb on - strandat 1940.466 kb on - strandat 1940.525 kb on + strandat 1940.525 kb on + strandat 1940.528 kb on - strandat 1940.618 kb on + strandat 1940.637 kb on + strandat 1940.716 kb on - strand, within DvMF_1574at 1941.107 kb on + strand, within DvMF_1574at 1941.199 kb on + strand, within DvMF_1574at 1941.338 kb on - strand, within DvMF_1574at 1941.899 kb on - strandat 1941.940 kb on + strandat 1942.272 kb on + strand, within DvMF_1575at 1942.399 kb on + strand, within DvMF_1575at 1942.453 kb on + strand, within DvMF_1575at 1942.463 kb on + strand, within DvMF_1575

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.6 mg/ml
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1,939,709 + DvMF_1573 0.44 -1.8
1,939,717 - DvMF_1573 0.44 -2.7
1,939,774 + DvMF_1573 0.48 -1.8
1,939,922 - DvMF_1573 0.59 -1.6
1,939,971 - DvMF_1573 0.62 -1.5
1,940,013 + DvMF_1573 0.65 +0.2
1,940,021 - DvMF_1573 0.66 -2.2
1,940,096 - DvMF_1573 0.71 -2.5
1,940,466 - -2.3
1,940,466 - -2.4
1,940,525 + -0.8
1,940,525 + -0.8
1,940,528 - -1.8
1,940,618 + -2.7
1,940,637 + -0.8
1,940,716 - DvMF_1574 0.14 -3.1
1,941,107 + DvMF_1574 0.49 -2.4
1,941,199 + DvMF_1574 0.57 -2.6
1,941,338 - DvMF_1574 0.69 +1.3
1,941,899 - -0.4
1,941,940 + -0.7
1,942,272 + DvMF_1575 0.28 -0.5
1,942,399 + DvMF_1575 0.36 -0.4
1,942,453 + DvMF_1575 0.39 -0.1
1,942,463 + DvMF_1575 0.40 -0.8

Or see this region's nucleotide sequence