Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1335

Experiment: MoYLS4 with Ceftazidime 0.6 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1334 and DvMF_1335 are separated by 143 nucleotidesDvMF_1335 and DvMF_1336 are separated by 179 nucleotidesDvMF_1336 and DvMF_1337 are separated by 64 nucleotides DvMF_1334: DvMF_1334 - response regulator receiver protein (RefSeq), at 1,629,160 to 1,630,653 _1334 DvMF_1335: DvMF_1335 - hypothetical protein (RefSeq), at 1,630,797 to 1,631,336 _1335 DvMF_1336: DvMF_1336 - hypothetical protein (RefSeq), at 1,631,516 to 1,631,998 _1336 DvMF_1337: DvMF_1337 - 4-hydroxybenzoate polyprenyltransferase (RefSeq), at 1,632,063 to 1,632,923 _1337 Position (kb) 1630 1631 1632Strain fitness (log2 ratio) -1 0 1at 1629.848 kb on - strand, within DvMF_1334at 1630.092 kb on - strand, within DvMF_1334at 1630.450 kb on + strand, within DvMF_1334at 1630.519 kb on + strandat 1630.588 kb on + strandat 1630.623 kb on + strandat 1630.624 kb on - strandat 1630.631 kb on - strandat 1630.709 kb on + strandat 1631.062 kb on - strand, within DvMF_1335at 1631.625 kb on - strand, within DvMF_1336at 1631.632 kb on + strand, within DvMF_1336at 1631.959 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.6 mg/ml
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1,629,848 - DvMF_1334 0.46 +0.1
1,630,092 - DvMF_1334 0.62 -0.1
1,630,450 + DvMF_1334 0.86 +0.0
1,630,519 + -0.3
1,630,588 + -0.5
1,630,623 + -0.1
1,630,624 - -1.2
1,630,631 - -0.6
1,630,709 + -0.4
1,631,062 - DvMF_1335 0.49 -0.8
1,631,625 - DvMF_1336 0.23 +0.1
1,631,632 + DvMF_1336 0.24 -0.5
1,631,959 - -0.3

Or see this region's nucleotide sequence