Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1324

Experiment: MoYLS4 with Ceftazidime 0.6 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1323 and DvMF_1324 are separated by 837 nucleotidesDvMF_1324 and DvMF_1325 are separated by 207 nucleotides DvMF_1323: DvMF_1323 - Auxin Efflux Carrier (RefSeq), at 1,614,584 to 1,615,597 _1323 DvMF_1324: DvMF_1324 - sigma54 specific transcriptional regulator, Fis family (RefSeq), at 1,616,435 to 1,617,487 _1324 DvMF_1325: DvMF_1325 - TPR repeat-containing protein (RefSeq), at 1,617,695 to 1,621,063 _1325 Position (kb) 1616 1617 1618Strain fitness (log2 ratio) -1 0 1 2at 1615.644 kb on + strandat 1615.694 kb on + strandat 1615.790 kb on - strandat 1615.915 kb on - strandat 1616.533 kb on + strandat 1616.603 kb on + strand, within DvMF_1324at 1616.718 kb on + strand, within DvMF_1324at 1616.951 kb on + strand, within DvMF_1324at 1616.959 kb on - strand, within DvMF_1324at 1616.960 kb on - strand, within DvMF_1324at 1617.376 kb on + strand, within DvMF_1324at 1618.103 kb on + strand, within DvMF_1325at 1618.280 kb on - strand, within DvMF_1325at 1618.294 kb on - strand, within DvMF_1325

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.6 mg/ml
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1,615,644 + -0.1
1,615,694 + -0.2
1,615,790 - -0.2
1,615,915 - +0.1
1,616,533 + +1.4
1,616,603 + DvMF_1324 0.16 +1.6
1,616,718 + DvMF_1324 0.27 +1.3
1,616,951 + DvMF_1324 0.49 +1.2
1,616,959 - DvMF_1324 0.50 +1.3
1,616,960 - DvMF_1324 0.50 +2.3
1,617,376 + DvMF_1324 0.89 +1.3
1,618,103 + DvMF_1325 0.12 +1.2
1,618,280 - DvMF_1325 0.17 +0.8
1,618,294 - DvMF_1325 0.18 +0.9

Or see this region's nucleotide sequence