Experiment: MoYLS4 with Ceftazidime 0.6 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1115 and DvMF_1116 are separated by 168 nucleotides DvMF_1116 and DvMF_1117 are separated by 370 nucleotides DvMF_1117 and DvMF_1118 are separated by 512 nucleotides
DvMF_1115: DvMF_1115 - thioesterase superfamily protein (RefSeq), at 1,365,997 to 1,366,413
_1115
DvMF_1116: DvMF_1116 - Threonyl/alanyl tRNA synthetase SAD (RefSeq), at 1,366,582 to 1,367,028
_1116
DvMF_1117: DvMF_1117 - heat shock protein 90 (RefSeq), at 1,367,399 to 1,369,405
_1117
DvMF_1118: DvMF_1118 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 1,369,918 to 1,372,659
_1118
Position (kb)
1367
1368
1369
1370 Strain fitness (log2 ratio)
-2
-1
0
1 at 1366.812 kb on - strand, within DvMF_1116 at 1366.963 kb on + strand, within DvMF_1116 at 1367.056 kb on - strand at 1367.203 kb on + strand at 1367.358 kb on - strand at 1367.359 kb on - strand at 1367.615 kb on - strand, within DvMF_1117 at 1367.741 kb on - strand, within DvMF_1117 at 1367.752 kb on - strand, within DvMF_1117 at 1367.901 kb on + strand, within DvMF_1117 at 1367.901 kb on + strand, within DvMF_1117 at 1368.167 kb on + strand, within DvMF_1117 at 1368.324 kb on + strand, within DvMF_1117 at 1368.547 kb on - strand, within DvMF_1117 at 1368.547 kb on - strand, within DvMF_1117 at 1368.633 kb on - strand, within DvMF_1117 at 1368.673 kb on + strand, within DvMF_1117 at 1368.681 kb on - strand, within DvMF_1117 at 1368.686 kb on + strand, within DvMF_1117 at 1368.703 kb on + strand, within DvMF_1117 at 1368.892 kb on + strand, within DvMF_1117 at 1368.941 kb on - strand, within DvMF_1117 at 1369.019 kb on + strand, within DvMF_1117 at 1369.024 kb on + strand, within DvMF_1117 at 1369.155 kb on - strand, within DvMF_1117 at 1369.209 kb on + strand at 1369.217 kb on - strand at 1369.345 kb on - strand at 1369.572 kb on - strand at 1369.910 kb on - strand at 1369.995 kb on + strand at 1370.029 kb on + strand at 1370.168 kb on - strand at 1370.342 kb on - strand, within DvMF_1118
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.6 mg/ml remove 1,366,812 - DvMF_1116 0.51 -0.2 1,366,963 + DvMF_1116 0.85 -1.9 1,367,056 - -1.8 1,367,203 + -1.3 1,367,358 - -0.1 1,367,359 - -0.5 1,367,615 - DvMF_1117 0.11 -0.8 1,367,741 - DvMF_1117 0.17 -1.6 1,367,752 - DvMF_1117 0.18 -0.6 1,367,901 + DvMF_1117 0.25 -0.4 1,367,901 + DvMF_1117 0.25 -0.1 1,368,167 + DvMF_1117 0.38 -0.6 1,368,324 + DvMF_1117 0.46 -0.4 1,368,547 - DvMF_1117 0.57 -0.5 1,368,547 - DvMF_1117 0.57 -0.8 1,368,633 - DvMF_1117 0.61 -0.1 1,368,673 + DvMF_1117 0.63 -0.8 1,368,681 - DvMF_1117 0.64 -0.2 1,368,686 + DvMF_1117 0.64 -0.6 1,368,703 + DvMF_1117 0.65 -0.7 1,368,892 + DvMF_1117 0.74 -0.6 1,368,941 - DvMF_1117 0.77 -0.1 1,369,019 + DvMF_1117 0.81 -0.4 1,369,024 + DvMF_1117 0.81 -0.4 1,369,155 - DvMF_1117 0.87 -0.3 1,369,209 + +0.2 1,369,217 - -0.5 1,369,345 - -2.0 1,369,572 - -0.5 1,369,910 - -0.6 1,369,995 + -0.1 1,370,029 + +0.4 1,370,168 - -0.3 1,370,342 - DvMF_1118 0.15 -1.0
Or see this region's nucleotide sequence