Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1066

Experiment: MoYLS4 with Ceftazidime 0.6 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1065 and DvMF_1066 are separated by 3 nucleotidesDvMF_1066 and DvMF_1067 overlap by 4 nucleotidesDvMF_1067 and DvMF_1068 are separated by 77 nucleotides DvMF_1065: DvMF_1065 - hypothetical protein (RefSeq), at 1,305,752 to 1,307,830 _1065 DvMF_1066: DvMF_1066 - hypothetical protein (RefSeq), at 1,307,834 to 1,308,430 _1066 DvMF_1067: DvMF_1067 - hypothetical protein (RefSeq), at 1,308,427 to 1,309,047 _1067 DvMF_1068: DvMF_1068 - hypothetical protein (RefSeq), at 1,309,125 to 1,309,523 _1068 Position (kb) 1307 1308 1309Strain fitness (log2 ratio) -1 0 1at 1306.894 kb on + strand, within DvMF_1065at 1307.128 kb on - strand, within DvMF_1065at 1307.184 kb on + strand, within DvMF_1065at 1307.212 kb on - strand, within DvMF_1065at 1307.247 kb on - strand, within DvMF_1065at 1307.333 kb on - strand, within DvMF_1065at 1307.443 kb on + strand, within DvMF_1065at 1307.471 kb on + strand, within DvMF_1065at 1307.506 kb on - strand, within DvMF_1065at 1307.602 kb on + strand, within DvMF_1065at 1307.999 kb on + strand, within DvMF_1066at 1308.084 kb on + strand, within DvMF_1066at 1308.156 kb on - strand, within DvMF_1066at 1308.312 kb on + strand, within DvMF_1066at 1308.383 kb on + strandat 1308.644 kb on + strand, within DvMF_1067at 1308.721 kb on + strand, within DvMF_1067at 1308.729 kb on + strand, within DvMF_1067at 1309.064 kb on - strandat 1309.112 kb on - strandat 1309.361 kb on + strand, within DvMF_1068

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.6 mg/ml
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1,306,894 + DvMF_1065 0.55 +0.7
1,307,128 - DvMF_1065 0.66 -0.5
1,307,184 + DvMF_1065 0.69 -0.6
1,307,212 - DvMF_1065 0.70 +0.1
1,307,247 - DvMF_1065 0.72 -1.1
1,307,333 - DvMF_1065 0.76 -0.7
1,307,443 + DvMF_1065 0.81 +0.0
1,307,471 + DvMF_1065 0.83 -0.6
1,307,506 - DvMF_1065 0.84 -0.7
1,307,602 + DvMF_1065 0.89 -0.7
1,307,999 + DvMF_1066 0.28 -0.9
1,308,084 + DvMF_1066 0.42 -1.4
1,308,156 - DvMF_1066 0.54 -0.6
1,308,312 + DvMF_1066 0.80 -0.4
1,308,383 + -0.1
1,308,644 + DvMF_1067 0.35 +0.3
1,308,721 + DvMF_1067 0.47 -0.9
1,308,729 + DvMF_1067 0.49 -0.1
1,309,064 - +0.1
1,309,112 - -0.1
1,309,361 + DvMF_1068 0.59 -1.3

Or see this region's nucleotide sequence