Experiment: MoYLS4 with Ceftazidime 0.6 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0775 and DvMF_0776 are separated by 10 nucleotides DvMF_0776 and DvMF_0777 overlap by 4 nucleotides DvMF_0777 and DvMF_0778 are separated by 135 nucleotides
DvMF_0775: DvMF_0775 - response regulator receiver protein (RefSeq), at 931,315 to 931,683
_0775
DvMF_0776: DvMF_0776 - CheW protein (RefSeq), at 931,694 to 932,380
_0776
DvMF_0777: DvMF_0777 - Cobyrinic acid ac-diamide synthase (RefSeq), at 932,377 to 933,150
_0777
DvMF_0778: DvMF_0778 - MCP methyltransferase, CheR-type (RefSeq), at 933,286 to 934,164
_0778
Position (kb) 932
933
934 Strain fitness (log2 ratio) -1
0
1
2 at 931.445 kb on - strand, within DvMF_0775 at 931.607 kb on - strand, within DvMF_0775 at 931.646 kb on + strand, within DvMF_0775 at 931.838 kb on + strand, within DvMF_0776 at 932.004 kb on - strand, within DvMF_0776 at 932.062 kb on - strand, within DvMF_0776 at 932.461 kb on - strand, within DvMF_0777 at 932.461 kb on - strand, within DvMF_0777 at 932.893 kb on - strand, within DvMF_0777 at 933.095 kb on - strand at 933.154 kb on - strand at 933.272 kb on - strand at 933.571 kb on - strand, within DvMF_0778 at 933.622 kb on + strand, within DvMF_0778 at 933.842 kb on - strand, within DvMF_0778
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.6 mg/ml remove 931,445 - DvMF_0775 0.35 +1.2 931,607 - DvMF_0775 0.79 +0.3 931,646 + DvMF_0775 0.90 +0.4 931,838 + DvMF_0776 0.21 +0.6 932,004 - DvMF_0776 0.45 +1.3 932,062 - DvMF_0776 0.54 +2.1 932,461 - DvMF_0777 0.11 +0.1 932,461 - DvMF_0777 0.11 -1.0 932,893 - DvMF_0777 0.67 -0.6 933,095 - -0.7 933,154 - -1.3 933,272 - -0.5 933,571 - DvMF_0778 0.32 +0.4 933,622 + DvMF_0778 0.38 -0.5 933,842 - DvMF_0778 0.63 +1.0
Or see this region's nucleotide sequence