Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0574

Experiment: MoYLS4 with Ceftazidime 0.6 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0573 and DvMF_0574 are separated by 50 nucleotidesDvMF_0574 and DvMF_0575 are separated by 546 nucleotides DvMF_0573: DvMF_0573 - glycosyl transferase group 1 (RefSeq), at 678,450 to 679,835 _0573 DvMF_0574: DvMF_0574 - hypothetical protein (RefSeq), at 679,886 to 680,512 _0574 DvMF_0575: DvMF_0575 - PhoH family protein (RefSeq), at 681,059 to 682,054 _0575 Position (kb) 679 680 681Strain fitness (log2 ratio) -1 0 1 2at 679.827 kb on + strandat 679.847 kb on + strandat 680.020 kb on - strand, within DvMF_0574at 680.062 kb on + strand, within DvMF_0574at 680.072 kb on - strand, within DvMF_0574at 680.089 kb on - strand, within DvMF_0574at 680.121 kb on + strand, within DvMF_0574at 680.219 kb on + strand, within DvMF_0574at 680.227 kb on - strand, within DvMF_0574at 680.349 kb on + strand, within DvMF_0574at 680.565 kb on - strandat 681.041 kb on + strandat 681.181 kb on - strand, within DvMF_0575at 681.256 kb on + strand, within DvMF_0575at 681.264 kb on - strand, within DvMF_0575at 681.411 kb on + strand, within DvMF_0575

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.6 mg/ml
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679,827 + +0.1
679,847 + -1.0
680,020 - DvMF_0574 0.21 -0.7
680,062 + DvMF_0574 0.28 +0.1
680,072 - DvMF_0574 0.30 -0.7
680,089 - DvMF_0574 0.32 -0.2
680,121 + DvMF_0574 0.37 +2.2
680,219 + DvMF_0574 0.53 -0.2
680,227 - DvMF_0574 0.54 -0.4
680,349 + DvMF_0574 0.74 +0.1
680,565 - +0.3
681,041 + -0.5
681,181 - DvMF_0575 0.12 -0.4
681,256 + DvMF_0575 0.20 -0.4
681,264 - DvMF_0575 0.21 +0.1
681,411 + DvMF_0575 0.35 +0.2

Or see this region's nucleotide sequence