Experiment: MoYLS4 with Ceftazidime 0.6 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0462 and DvMF_0463 are separated by 62 nucleotides DvMF_0463 and DvMF_0464 are separated by 134 nucleotides DvMF_0464 and DvMF_0465 are separated by 120 nucleotides
DvMF_0462: DvMF_0462 - protein of unknown function DUF190 (RefSeq), at 541,348 to 541,743
_0462
DvMF_0463: DvMF_0463 - GCN5-related N-acetyltransferase (RefSeq), at 541,806 to 542,342
_0463
DvMF_0464: DvMF_0464 - nitrite and sulphite reductase 4Fe-4S region (RefSeq), at 542,477 to 543,154
_0464
DvMF_0465: DvMF_0465 - response regulator receiver modulated CheB methylesterase (RefSeq), at 543,275 to 544,345
_0465
Position (kb) 542
543
544 Strain fitness (log2 ratio) -1
0
1 at 541.641 kb on - strand, within DvMF_0462 at 541.738 kb on + strand at 542.136 kb on + strand, within DvMF_0463 at 542.555 kb on - strand, within DvMF_0464 at 542.786 kb on + strand, within DvMF_0464 at 542.809 kb on - strand, within DvMF_0464 at 542.896 kb on + strand, within DvMF_0464 at 542.904 kb on - strand, within DvMF_0464 at 542.966 kb on + strand, within DvMF_0464 at 543.220 kb on - strand at 543.266 kb on + strand at 543.274 kb on - strand at 543.362 kb on + strand at 543.383 kb on - strand, within DvMF_0465 at 543.399 kb on - strand, within DvMF_0465 at 543.399 kb on - strand, within DvMF_0465 at 543.781 kb on - strand, within DvMF_0465 at 543.862 kb on - strand, within DvMF_0465 at 544.149 kb on - strand, within DvMF_0465
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.6 mg/ml remove 541,641 - DvMF_0462 0.74 -0.1 541,738 + -0.3 542,136 + DvMF_0463 0.61 -0.0 542,555 - DvMF_0464 0.12 -0.6 542,786 + DvMF_0464 0.46 -0.3 542,809 - DvMF_0464 0.49 +0.1 542,896 + DvMF_0464 0.62 +0.2 542,904 - DvMF_0464 0.63 -0.6 542,966 + DvMF_0464 0.72 +1.4 543,220 - -0.3 543,266 + -0.1 543,274 - +0.5 543,362 + +0.2 543,383 - DvMF_0465 0.10 +0.4 543,399 - DvMF_0465 0.12 +1.2 543,399 - DvMF_0465 0.12 -0.3 543,781 - DvMF_0465 0.47 +0.5 543,862 - DvMF_0465 0.55 +1.0 544,149 - DvMF_0465 0.82 +0.5
Or see this region's nucleotide sequence