Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0452

Experiment: MoYLS4 with Ceftazidime 0.6 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0451 and DvMF_0452 overlap by 4 nucleotidesDvMF_0452 and DvMF_0453 overlap by 4 nucleotides DvMF_0451: DvMF_0451 - DNA ligase, NAD-dependent (RefSeq), at 528,382 to 530,808 _0451 DvMF_0452: DvMF_0452 - hypothetical protein (RefSeq), at 530,805 to 531,647 _0452 DvMF_0453: DvMF_0453 - TrkA-N domain protein (RefSeq), at 531,644 to 532,684 _0453 Position (kb) 530 531 532Strain fitness (log2 ratio) -1 0 1at 530.818 kb on - strandat 530.851 kb on - strandat 530.915 kb on + strand, within DvMF_0452at 531.074 kb on + strand, within DvMF_0452at 531.203 kb on - strand, within DvMF_0452at 531.445 kb on + strand, within DvMF_0452at 531.458 kb on - strand, within DvMF_0452at 531.732 kb on + strandat 532.051 kb on - strand, within DvMF_0453at 532.431 kb on + strand, within DvMF_0453at 532.616 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.6 mg/ml
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530,818 - -0.4
530,851 - +0.4
530,915 + DvMF_0452 0.13 +0.0
531,074 + DvMF_0452 0.32 +0.1
531,203 - DvMF_0452 0.47 -0.3
531,445 + DvMF_0452 0.76 -0.3
531,458 - DvMF_0452 0.77 +0.1
531,732 + -0.2
532,051 - DvMF_0453 0.39 -1.6
532,431 + DvMF_0453 0.76 -0.7
532,616 - -0.8

Or see this region's nucleotide sequence