Experiment: MoYLS4 with Ceftazidime 0.6 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0239 and DvMF_0240 are separated by 245 nucleotides DvMF_0240 and DvMF_0241 are separated by 87 nucleotides DvMF_0241 and DvMF_0242 are separated by 82 nucleotides
DvMF_0239: DvMF_0239 - Beta tubulin, autoregulation binding site (RefSeq), at 269,193 to 271,886
_0239
DvMF_0240: DvMF_0240 - hypothetical protein (RefSeq), at 272,132 to 272,500
_0240
DvMF_0241: DvMF_0241 - major facilitator superfamily MFS_1 (RefSeq), at 272,588 to 273,805
_0241
DvMF_0242: DvMF_0242 - DRTGG domain protein (RefSeq), at 273,888 to 274,952
_0242
Position (kb) 272
273
274 Strain fitness (log2 ratio) -2
-1
0
1
2 at 271.683 kb on + strand at 271.725 kb on + strand at 271.796 kb on + strand at 271.796 kb on + strand at 271.796 kb on + strand at 271.804 kb on - strand at 271.804 kb on - strand at 271.804 kb on - strand at 271.804 kb on - strand at 271.855 kb on + strand at 271.863 kb on - strand at 271.869 kb on + strand at 271.869 kb on + strand at 272.028 kb on - strand at 272.182 kb on - strand, within DvMF_0240 at 272.396 kb on + strand, within DvMF_0240 at 272.396 kb on + strand, within DvMF_0240 at 272.636 kb on - strand at 272.656 kb on + strand at 272.800 kb on - strand, within DvMF_0241 at 273.113 kb on - strand, within DvMF_0241 at 273.128 kb on + strand, within DvMF_0241 at 273.136 kb on - strand, within DvMF_0241 at 273.268 kb on + strand, within DvMF_0241 at 273.359 kb on - strand, within DvMF_0241 at 273.720 kb on + strand at 273.747 kb on + strand at 273.787 kb on + strand at 273.893 kb on - strand at 274.090 kb on + strand, within DvMF_0242 at 274.264 kb on + strand, within DvMF_0242 at 274.269 kb on + strand, within DvMF_0242 at 274.344 kb on - strand, within DvMF_0242 at 274.390 kb on + strand, within DvMF_0242 at 274.437 kb on + strand, within DvMF_0242 at 274.469 kb on + strand, within DvMF_0242 at 274.469 kb on + strand, within DvMF_0242 at 274.477 kb on - strand, within DvMF_0242 at 274.508 kb on - strand, within DvMF_0242 at 274.592 kb on + strand, within DvMF_0242 at 274.594 kb on - strand, within DvMF_0242
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.6 mg/ml remove 271,683 + -0.1 271,725 + -0.5 271,796 + -1.0 271,796 + +1.7 271,796 + -0.5 271,804 - -1.1 271,804 - -0.4 271,804 - -0.5 271,804 - -0.4 271,855 + +0.6 271,863 - -0.9 271,869 + -0.9 271,869 + -0.3 272,028 - -0.5 272,182 - DvMF_0240 0.14 -0.7 272,396 + DvMF_0240 0.72 -0.5 272,396 + DvMF_0240 0.72 -0.1 272,636 - -0.3 272,656 + +0.5 272,800 - DvMF_0241 0.17 -0.0 273,113 - DvMF_0241 0.43 -0.3 273,128 + DvMF_0241 0.44 -0.3 273,136 - DvMF_0241 0.45 -1.1 273,268 + DvMF_0241 0.56 +2.3 273,359 - DvMF_0241 0.63 -1.4 273,720 + -0.3 273,747 + -0.4 273,787 + -0.4 273,893 - -0.6 274,090 + DvMF_0242 0.19 -2.6 274,264 + DvMF_0242 0.35 -0.9 274,269 + DvMF_0242 0.36 -1.5 274,344 - DvMF_0242 0.43 -0.8 274,390 + DvMF_0242 0.47 -0.8 274,437 + DvMF_0242 0.52 -1.5 274,469 + DvMF_0242 0.55 -1.1 274,469 + DvMF_0242 0.55 -1.8 274,477 - DvMF_0242 0.55 -1.5 274,508 - DvMF_0242 0.58 +0.9 274,592 + DvMF_0242 0.66 -1.0 274,594 - DvMF_0242 0.66 -1.4
Or see this region's nucleotide sequence