Experiment: MoYLS4 with Ceftazidime 0.6 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0215 and DvMF_0216 are separated by 17 nucleotides DvMF_0216 and DvMF_0217 are separated by 289 nucleotides DvMF_0217 and DvMF_0218 are separated by 102 nucleotides DvMF_0218 and DvMF_0219 are separated by 317 nucleotides
DvMF_0215: DvMF_0215 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 242,020 to 243,606
_0215
DvMF_0216: DvMF_0216 - hypothetical protein (RefSeq), at 243,624 to 244,205
_0216
DvMF_0217: DvMF_0217 - Hpt protein (RefSeq), at 244,495 to 244,860
_0217
DvMF_0218: DvMF_0218 - hypothetical protein (RefSeq), at 244,963 to 245,226
_0218
DvMF_0219: DvMF_0219 - Peroxiredoxin (RefSeq), at 245,544 to 246,170
_0219
Position (kb) 244
245 Strain fitness (log2 ratio) -1
0
1
2 at 243.540 kb on + strand at 243.660 kb on - strand at 243.764 kb on - strand, within DvMF_0216 at 243.819 kb on + strand, within DvMF_0216 at 243.822 kb on - strand, within DvMF_0216 at 244.300 kb on - strand at 244.512 kb on - strand at 244.513 kb on - strand at 244.740 kb on + strand, within DvMF_0217 at 244.754 kb on - strand, within DvMF_0217 at 244.887 kb on + strand at 244.921 kb on + strand at 244.939 kb on - strand at 245.212 kb on - strand at 245.654 kb on + strand, within DvMF_0219 at 245.725 kb on + strand, within DvMF_0219 at 245.728 kb on - strand, within DvMF_0219 at 245.761 kb on + strand, within DvMF_0219
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.6 mg/ml remove 243,540 + -1.1 243,660 - -0.0 243,764 - DvMF_0216 0.24 -0.5 243,819 + DvMF_0216 0.34 -0.7 243,822 - DvMF_0216 0.34 -0.3 244,300 - -1.0 244,512 - -0.7 244,513 - +1.6 244,740 + DvMF_0217 0.67 +1.4 244,754 - DvMF_0217 0.71 +1.9 244,887 + -1.1 244,921 + -0.4 244,939 - -0.9 245,212 - -0.3 245,654 + DvMF_0219 0.18 +1.1 245,725 + DvMF_0219 0.29 -0.1 245,728 - DvMF_0219 0.29 +0.4 245,761 + DvMF_0219 0.35 -0.2
Or see this region's nucleotide sequence